HL_9QEG_004
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QEG_004 not in the Motif Atlas
- Homologous match to HL_7UQ6_003
- Geometric discrepancy: 0.1585
- The information below is about HL_7UQ6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9QEG|1|8|G|54
9QEG|1|8|U|55
9QEG|1|8|U|56
9QEG|1|8|C|57
9QEG|1|8|A|58
9QEG|1|8|A|59
9QEG|1|8|A|60
9QEG|1|8|U|61
9QEG|1|8|C|62
Current chains
- Chain 8
- P-site tRNA molecule
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain K
- Large ribosomal subunit protein uL16
Coloring options: