9QEG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9QEG_001 | 1/11/5:68 | No text annotation | geometric HL_8Y03_001 NA | |
| HL_9QEG_002 | 1/8/13:23 | No text annotation | homologous HL_7U2I_103 NA | |
| HL_9QEG_003 | 1/8/32:40 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_9QEG_005 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.1 | |
| HL_9QEG_006 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
| HL_9QEG_007 | 1/A/122:127 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_9QEG_008 | 1/A/135:144 | No text annotation | geometric HL_4TUE_219 NA | |
| HL_9QEG_009 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_9QEG_010 | 1/A/197:204 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_9QEG_011 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_9QEG_012 | 1/A/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.1 | |
| HL_9QEG_013 | 1/A/362:366 | No text annotation | geometric HL_8CRE_006 NA | |
| HL_9QEG_014 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_9QEG_015 | 1/A/428:438 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_9QEG_016 | 1/A/456:463 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_9QEG_017 | 1/A/508:513 | GNRA | homologous HL_5J7L_147 NA | |
| HL_9QEG_018 | 1/A/533:538 | GNRA | homologous HL_9DFE_015 HL_34789.1 | |
| HL_9QEG_019 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_9QEG_020 | 1/A/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.1 | |
| HL_9QEG_021 | 1/A/655:661 | GNRA | geometric HL_3V7E_003 NA | |
| HL_9QEG_022 | 1/A/674:679 | GNRA | homologous HL_9DFE_018 HL_34789.1 | |
| HL_9QEG_023 | 1/A/686:692 | GNRA | homologous HL_9DFE_019 HL_34789.1 | |
| HL_9QEG_024 | 1/A/757:764 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_9QEG_025 | 1/A/789:798 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_9QEG_026 | 1/A/824:830 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_9QEG_027 | 1/A/871:876 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_9QEG_028 | 1/A/999:1006 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_9QEG_029 | 1/A/1022:1029 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_9QEG_030 | 1/A/1260:1265 | GNRA | homologous HL_4WF9_031 HL_34789.1 | |
| HL_9QEG_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_031 HL_33597.1 | |
| HL_9QEG_032 | 1/A/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_9QEG_033 | 1/A/1400:1405 | GNRA | homologous HL_5J7L_167 NA | |
| HL_9QEG_034 | 1/A/1426:1435 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_9QEG_035 | 1/A/1612:1615 | Mini UNCG | homologous HL_9DFE_037 HL_90436.1 | |
| HL_9QEG_036 | 1/A/1656:1663 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_9QEG_037 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_45359.1 | |
| HL_9QEG_038 | 1/A/1735:1740 | UNCG | homologous HL_5J7L_175 NA | |
| HL_9QEG_039 | 1/A/1779:1783 | No text annotation | homologous HL_9DFE_042 HL_80709.4 | |
| HL_9QEG_040 | 1/A/1804:1814 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_9QEG_041 | 1/A/1833:1838 | GNRA | homologous HL_9DFE_044 HL_34789.1 | |
| HL_9QEG_042 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_9QEG_043 | 1/A/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_9QEG_044 | 1/A/2236:2242 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_9QEG_045 | 1/A/2275:2283 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_9QEG_046 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_9QEG_047 | 1/A/2351:2358 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.1 | |
| HL_9QEG_048 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_9QEG_049 | 1/A/2401:2406 | GNRA | homologous HL_5J7L_191 NA | |
| HL_9QEG_050 | 1/A/2431:2440 | No text annotation | homologous HL_4WF9_055 HL_51853.1 | |
| HL_9QEG_051 | 1/A/2498:2506 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_9QEG_052 | 1/A/2555:2562 | GNRA variation | homologous HL_4WF9_057 HL_46665.1 | |
| HL_9QEG_053 | 1/A/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_9QEG_054 | 1/A/2621:2626 | GNRA | homologous HL_9DFE_061 HL_34789.1 | |
| HL_9QEG_055 | 1/A/2685:2690 | GNRA | homologous HL_7A0S_063 HL_34789.1 | |
| HL_9QEG_056 | 1/A/2728:2733 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_9QEG_057 | 1/A/2772:2786 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_9QEG_058 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_37889.1 | |
| HL_9QEG_059 | 1/A/2876:2881 | GNRA | homologous HL_5J7L_202 NA | |
| HL_9QEG_060 | 1/Aa/13:23 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_9QEG_061 | 1/Aa/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_9QEG_062 | 1/Aa/193:198 | No text annotation | ||
| HL_9QEG_063 | 1/Aa/218:222 | No text annotation | ||
| HL_9QEG_064 | 1/Aa/267:275 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_9QEG_065 | 1/Aa/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_9QEG_066 | 1/Aa/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_9QEG_067 | 1/Aa/350:355 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_9QEG_068 | 1/Aa/387:392 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_9QEG_069 | 1/Aa/427:432 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_9QEG_070 | 1/Aa/470:479 | No text annotation | geometric HL_4TUE_219 NA | |
| HL_9QEG_071 | 1/Aa/530:535 | GNRA variation | homologous HL_4LFB_033 HL_34789.1 | |
| HL_9QEG_072 | 1/Aa/625:631 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_9QEG_073 | 1/Aa/697:706 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_9QEG_074 | 1/Aa/734:739 | GNRA | homologous HL_5J7L_016 NA | |
| HL_9QEG_075 | 1/Aa/794:804 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_9QEG_076 | 1/Aa/871:876 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_9QEG_077 | 1/Aa/906:911 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_9QEG_078 | 1/Aa/972:981 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_9QEG_079 | 1/Aa/1021:1026 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_9QEG_080 | 1/Aa/1087:1092 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_9QEG_081 | 1/Aa/1100:1107 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_9QEG_082 | 1/Aa/1275:1280 | GNRA | homologous HL_5J7L_027 NA | |
| HL_9QEG_083 | 1/Aa/1324:1333 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_9QEG_084 | 1/Aa/1366:1376 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_9QEG_085 | 1/Aa/1526:1531 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_9QEG_086 | 1/B/32:46 | No text annotation | geometric HL_4V9F_074 HL_97756.3 | |
| HL_9QEG_087 | 1/B/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_9QEG_088 | 1/B/83:88 | No text annotation | geometric HL_9DFE_006 HL_51020.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9QEG_004 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9QEG_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_9QEG_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_9QEG_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_9QEG_004 | 1/A/56:76, 1/A/109:113 | No text annotation | ||
| IL_9QEG_005 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_9DFE_004 IL_54465.1 | |
| IL_9QEG_006 | 1/A/152:153, 1/A/175:177 | Major groove platform | geometric IL_9DFE_092 IL_48076.7 | |
| IL_9QEG_007 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_9QEG_008 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.1 | |
| IL_9QEG_009 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_9QEG_010 | 1/A/319:327, 1/A/399:400 | No text annotation | ||
| IL_9QEG_011 | 1/A/336:338, 1/A/386:390 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_9QEG_012 | 1/A/527:530, 1/A/541:554 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_9QEG_013 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
| IL_9QEG_014 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_9QEG_015 | 1/A/638:640, 1/A/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_9QEG_016 | 1/A/649:653, 1/A/663:667 | No text annotation | homologous IL_9DFE_014 IL_66798.3 | |
| IL_9QEG_017 | 1/A/717:719, 1/A/851:853 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.1 | |
| IL_9QEG_018 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_9QEG_019 | 1/A/742:743, 1/A/808:810 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_9QEG_020 | 1/A/747:748, 1/A/773:775 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_9QEG_021 | 1/A/748:752, 1/A/769:773 | Triple sheared | homologous IL_9DFE_019 IL_15190.1 | |
| IL_9QEG_022 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_9QEG_023 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_9QEG_024 | 1/A/882:883, 1/A/984:986 | Single stack bend | homologous IL_4WF9_028 IL_15011.1 | |
| IL_9QEG_025 | 1/A/889:892, 1/A/977:978 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.1 | |
| IL_9QEG_026 | 1/A/889:893, 1/A/975:978 | No text annotation | geometric IL_4WF9_029 IL_01742.1 | |
| IL_9QEG_027 | 1/A/892:893, 1/A/975:977 | 90 degree turn | homologous IL_7A0S_024 IL_79144.1 | |
| IL_9QEG_028 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4WF9_031 IL_94128.1 | |
| IL_9QEG_029 | 1/A/907:908, 1/A/958:960 | Minor groove platform | homologous IL_9DFE_027 IL_34520.1 | |
| IL_9QEG_030 | 1/A/909:913, 1/A/954:957 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_9QEG_031 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C | homologous IL_4WF9_035 IL_05642.1 | |
| IL_9QEG_032 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_9QEG_033 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_9QEG_034 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U | homologous IL_4WF9_038 IL_97561.1 | |
| IL_9QEG_035 | 1/A/1062:1068, 1/A/1184:1188 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_9QEG_036 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation | homologous IL_4WF9_040 IL_50715.4 | |
| IL_9QEG_037 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_9QEG_038 | 1/A/1081:1083, 1/A/1160:1162 | Isolated non-canonical cWW pair | homologous IL_4WF9_042 IL_01003.1 | |
| IL_9QEG_039 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_9QEG_040 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.1 | |
| IL_9QEG_041 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_9QEG_042 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_9QEG_043 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_9QEG_044 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW | geometric IL_9DFE_049 IL_74641.1 | |
| IL_9QEG_045 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_9QEG_046 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_9QEG_047 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_9QEG_048 | 1/A/1477:1479, 1/A/1604:1607 | No text annotation | homologous IL_9DFE_055 IL_31990.1 | |
| IL_9QEG_049 | 1/A/1481:1484, 1/A/1598:1602 | No text annotation | homologous IL_9DFE_056 IL_74317.1 | |
| IL_9QEG_050 | 1/A/1512:1515, 1/A/1565:1569 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_9QEG_051 | 1/A/1519:1522, 1/A/1558:1561 | Double sheared | geometric IL_4LFB_060 IL_58355.1 | |
| IL_9QEG_052 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_9QEG_053 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_9QEG_054 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_9QEG_055 | 1/A/1710:1718, 1/A/2017:2021 | No text annotation | geometric IL_5J7L_386 NA | |
| IL_9QEG_056 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_9QEG_057 | 1/A/1730:1735, 1/A/1740:1746 | No text annotation | homologous IL_9DFE_068 IL_20700.1 | |
| IL_9QEG_058 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_9QEG_059 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_9QEG_060 | 1/A/1864:1867, 1/A/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_9QEG_061 | 1/A/1868:1869, 1/A/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_9QEG_062 | 1/A/1873:1876, 1/A/1920:1921 | No text annotation | ||
| IL_9QEG_063 | 1/A/1878:1882, 1/A/1914:1918 | UAA/GAN with extra stack | homologous IL_9DFE_074 IL_89021.3 | |
| IL_9QEG_064 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared | homologous IL_9DFE_075 IL_15190.1 | |
| IL_9QEG_065 | 1/A/1960:1961, 1/A/1991:1994 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_9QEG_066 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation | homologous IL_5J7L_319 NA | |
| IL_9QEG_067 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_4WF9_078 IL_48076.7 | |
| IL_9QEG_068 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_9QEG_069 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_9DFE_080 IL_97561.1 | |
| IL_9QEG_070 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform | homologous IL_9DFE_081 IL_34520.1 | |
| IL_9QEG_071 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.1 | |
| IL_9QEG_072 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G | homologous IL_4WF9_125 IL_28408.1 | |
| IL_9QEG_073 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.1 | |
| IL_9QEG_074 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_9QEG_075 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_9QEG_076 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_9QEG_077 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform | homologous IL_9DFE_092 IL_48076.7 | |
| IL_9QEG_078 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_9DFE_093 IL_48076.7 | |
| IL_9QEG_079 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_36931.1 | |
| IL_9QEG_080 | 1/A/2493:2497, 1/A/2507:2511 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_9QEG_081 | 1/A/2534:2535, 1/A/2607:2609 | No text annotation | homologous IL_9DFE_096 IL_46637.1 | |
| IL_9QEG_082 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_9QEG_083 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation | homologous IL_4WF9_096 IL_44609.1 | |
| IL_9QEG_084 | 1/A/2549:2550, 1/A/2567:2570 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.1 | |
| IL_9QEG_085 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation | ||
| IL_9QEG_086 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_9QEG_087 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_9DFE_102 IL_16458.5 | |
| IL_9QEG_088 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.12 | |
| IL_9QEG_089 | 1/A/2714:2718, 1/A/2745:2749 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_9QEG_090 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_9QEG_091 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_91079.1 | |
| IL_9QEG_092 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_9QEG_093 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_9QEG_094 | 1/A/2867:2872, 1/A/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_9QEG_095 | 1/Aa/31:33, 1/Aa/560:561 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_9QEG_096 | 1/Aa/45:46, 1/Aa/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_9QEG_097 | 1/Aa/48:53, 1/Aa/367:369 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_9QEG_098 | 1/Aa/55:57, 1/Aa/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_9QEG_099 | 1/Aa/64:67, 1/Aa/102:103 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_9QEG_100 | 1/Aa/68:70, 1/Aa/99:101 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_9QEG_101 | 1/Aa/128:131, 1/Aa/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_9QEG_102 | 1/Aa/132:136, 1/Aa/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_9QEG_103 | 1/Aa/147:153, 1/Aa/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_9QEG_104 | 1/Aa/250:255, 1/Aa/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_9QEG_105 | 1/Aa/257:260, 1/Aa/282:283 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_9QEG_106 | 1/Aa/300:301, 1/Aa/312:316 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_9QEG_107 | 1/Aa/375:377, 1/Aa/400:401 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_9QEG_108 | 1/Aa/379:383, 1/Aa/397:398 | C-loop | homologous IL_5J7L_018 NA | |
| IL_9QEG_109 | 1/Aa/383:384, 1/Aa/395:397 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_9QEG_110 | 1/Aa/454:458, 1/Aa/491:496 | No text annotation | ||
| IL_9QEG_111 | 1/Aa/458:464, 1/Aa/485:491 | No text annotation | ||
| IL_9QEG_112 | 1/Aa/512:519, 1/Aa/548:549 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_9QEG_113 | 1/Aa/523:529, 1/Aa/536:544 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_9QEG_114 | 1/Aa/577:583, 1/Aa/889:890 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_9QEG_115 | 1/Aa/588:592, 1/Aa/765:769 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_9QEG_116 | 1/Aa/602:604, 1/Aa/652:653 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_9QEG_117 | 1/Aa/605:606, 1/Aa/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_9QEG_118 | 1/Aa/612:613, 1/Aa/640:642 | Single bulged U | geometric IL_2A64_003 NA | |
| IL_9QEG_119 | 1/Aa/613:620, 1/Aa/636:640 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_9QEG_120 | 1/Aa/662:663, 1/Aa/759:762 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 NA | |
| IL_9QEG_121 | 1/Aa/664:666, 1/Aa/755:758 | No text annotation | geometric IL_8CRE_403 IL_36931.1 | |
| IL_9QEG_122 | 1/Aa/670:674, 1/Aa/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_9QEG_123 | 1/Aa/681:685, 1/Aa/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_9QEG_124 | 1/Aa/692:696, 1/Aa/707:714 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_9QEG_125 | 1/Aa/782:787, 1/Aa/811:813 | No text annotation | geometric IL_8P9A_423 IL_31359.1 | |
| IL_9QEG_126 | 1/Aa/787:791, 1/Aa/807:811 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_9QEG_127 | 1/Aa/896:903, 1/Aa/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_9QEG_128 | 1/Aa/931:932, 1/Aa/1403:1405 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_9QEG_129 | 1/Aa/934:936, 1/Aa/1400:1401 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_9QEG_130 | 1/Aa/942:944, 1/Aa/1390:1394 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_9QEG_131 | 1/Aa/962:963, 1/Aa/1236:1238 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_9QEG_132 | 1/Aa/1058:1061, 1/Aa/1218:1220 | Isolated non-canonical cWW pair | geometric IL_1Z79_002 IL_01003.1 | |
| IL_9QEG_133 | 1/Aa/1063:1067, 1/Aa/1214:1216 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_9QEG_134 | 1/Aa/1068:1069, 1/Aa/1209:1213 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_9QEG_135 | 1/Aa/1071:1072, 1/Aa/1205:1207 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_9QEG_136 | 1/Aa/1072:1074, 1/Aa/1203:1205 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_9QEG_137 | 1/Aa/1135:1138, 1/Aa/1155:1159 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_9QEG_138 | 1/Aa/1265:1268, 1/Aa/1287:1292 | No text annotation | ||
| IL_9QEG_139 | 1/Aa/1313:1318, 1/Aa/1339:1344 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_9QEG_140 | 1/Aa/1409:1411, 1/Aa/1512:1515 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_9QEG_141 | 1/Aa/1411:1414, 1/Aa/1508:1512 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_9QEG_142 | 1/Aa/1415:1417, 1/Aa/1505:1507 | Isolated non-canonical cWW pair | homologous IL_4LFB_069 IL_01003.1 | |
| IL_9QEG_143 | 1/Aa/1417:1419, 1/Aa/1502:1505 | No text annotation | geometric IL_6DME_003 IL_75527.1 | |
| IL_9QEG_144 | 1/Aa/1422:1424, 1/Aa/1497:1499 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_9QEG_145 | 1/Aa/1426:1429, 1/Aa/1492:1495 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_9QEG_146 | 1/Aa/1434:1437, 1/Aa/1484:1487 | Tandem non-canonical cWW pairs | geometric IL_5LQT_002 NA | |
| IL_9QEG_147 | 1/Aa/1440:1445, 1/Aa/1477:1481 | No text annotation | geometric IL_3BBM_001 IL_47352.1 | |
| IL_9QEG_148 | 1/Aa/1445:1447, 1/Aa/1475:1477 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_9QEG_149 | 1/Aa/1544:1546, 1/d/5:7 | Isolated cWH basepair | geometric IL_8AF0_002 NA | |
| IL_9QEG_150 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_9QEG_151 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_9QEG_152 | 1/B/28:29, 1/B/49:52 | No text annotation | homologous IL_9DFE_112 IL_73108.1 | |
| IL_9QEG_153 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9QEG_154 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_9QEG_155 | 1/B/78:80, 1/B/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9QEG_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_9QEG_002 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_9QEG_003 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | ||
| J3_9QEG_004 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_9QEG_005 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_9QEG_006 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_4WF9_002 J3_46658.1 | |
| J3_9QEG_007 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_9DFE_008 J3_69816.1 | |
| J3_9QEG_008 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_9QEG_009 | 1/A/1343:1346, 1/A/1649:1655, 1/A/1664:1666 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_9QEG_010 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_9QEG_011 | 1/A/1468:1473, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_9QEG_012 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_9QEG_013 | 1/A/2309:2311, 1/A/2411:2422, 1/A/2448:2454 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_9QEG_014 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_9QEG_015 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_9QEG_016 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation | homologous J3_9DFE_018 J3_24127.1 | |
| J3_9QEG_017 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_9QEG_018 | 1/Aa/47:48, 1/Aa/369:375, 1/Aa/401:403 | No text annotation | geometric J3_4LFB_010 J3_58657.1 | |
| J3_9QEG_019 | 1/Aa/47:53, 1/Aa/367:375, 1/Aa/401:403 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_9QEG_020 | 1/Aa/594:596, 1/Aa/659:662, 1/Aa/762:763 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_9QEG_021 | 1/Aa/594:596, 1/Aa/659:663, 1/Aa/759:763 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_9QEG_022 | 1/Aa/680:681, 1/Aa/725:733, 1/Aa/740:742 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_9QEG_023 | 1/Aa/834:837, 1/Aa/866:870, 1/Aa/877:883 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_9QEG_024 | 1/Aa/945:948, 1/Aa/1354:1360, 1/Aa/1382:1389 | No text annotation | homologous J3_5J7L_052 NA | |
| J3_9QEG_025 | 1/Aa/952:955, 1/Aa/1245:1247, 1/Aa/1347:1350 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_9QEG_026 | 1/Aa/964:971, 1/Aa/982:993, 1/Aa/1231:1235 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_9QEG_027 | 1/Aa/1074:1079, 1/Aa/1118:1124, 1/Aa/1197:1203 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_9QEG_028 | 1/Aa/1084:1085, 1/Aa/1094:1097, 1/Aa/1110:1113 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_9QEG_029 | 1/Aa/1247:1251, 1/Aa/1306:1313, 1/Aa/1344:1347 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_9QEG_030 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation | ||
| J4_9QEG_001 | 1/8/7:10, 1/8/26:28, 1/8/44:50, 1/8/66:67 | tRNA junction | homologous J4_1IL2_001 J4_58311.1 | |
| J4_9QEG_002 | 1/A/271:272, 1/A/416:421, 1/A/445:452, 1/A/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_9QEG_003 | 1/A/340:344, 1/A/359:362, 1/A/366:368, 1/A/380:384 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_9QEG_004 | 1/A/644:647, 1/A/669:673, 1/A/680:683, 1/A/695:701 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_9QEG_005 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1692, 1/A/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_9QEG_006 | 1/A/1347:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1648 | No text annotation | ||
| J4_9QEG_007 | 1/A/1350:1351, 1/A/1375:1380, 1/A/1441:1442, 1/A/1641:1647 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_9QEG_008 | 1/A/1488:1490, 1/A/1510:1511, 1/A/1570:1574, 1/A/1590:1594 | No text annotation | ||
| J4_9QEG_009 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_9QEG_010 | 1/A/1860:1862, 1/A/1932:1933, 1/A/1951:1960, 1/A/1994:1999 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_9QEG_011 | 1/A/2312:2316, 1/A/2370:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_9QEG_012 | 1/A/2670:2673, 1/A/2701:2703, 1/A/2758:2762, 1/A/2796:2798 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_9QEG_013 | 1/Aa/114:122, 1/Aa/246:248, 1/Aa/294:297, 1/Aa/319:320 | No text annotation | ||
| J4_9QEG_014 | 1/Aa/142:144, 1/Aa/178:185, 1/Aa/206:213, 1/Aa/227:229 | No text annotation | ||
| J4_9QEG_015 | 1/Aa/583:585, 1/Aa/772:777, 1/Aa/818:829, 1/Aa/888:889 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_9QEG_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_9QEG_002 | 1/A/576:578, 1/A/603:607, 1/A/620:622, 1/A/1299:1300, 1/A/2044:2045 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_9QEG_003 | 1/A/627:632, 1/A/713:716, 1/A/854:857, 1/A/1234:1235, 1/A/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_9QEG_004 | 1/A/1718:1726, 1/A/1750:1751, 1/A/1778:1779, 1/A/1783:1791, 1/A/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_9QEG_005 | 1/A/2084:2091, 1/A/2473:2480, 1/A/2527:2534, 1/A/2609:2615, 1/A/2633:2638 | No text annotation | ||
| J5_9QEG_006 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2309, 1/A/2454:2462 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_9QEG_007 | 1/Aa/37:40, 1/Aa/411:414, 1/Aa/444:449, 1/Aa/501:508, 1/Aa/553:556 | No text annotation | ||
| J5_9QEG_008 | 1/Aa/59:62, 1/Aa/105:112, 1/Aa/322:324, 1/Aa/345:347, 1/Aa/358:362 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_9QEG_001 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/472:479 | No text annotation | ||
| J6_9QEG_002 | 1/A/2101:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2311, 1/A/2411:2422, 1/A/2448:2462 | No text annotation | ||
| J7_9QEG_001 | 1/A/8:15, 1/A/570:576, 1/A/2045:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2914 | No text annotation | ||
| J7_9QEG_002 | 1/A/862:867, 1/A/880:881, 1/A/987:990, 1/A/1015:1020, 1/A/1031:1035, 1/A/1207:1208, 1/A/1224:1229 | No text annotation |
Problematic loops
No problematic loops
Coloring options: