HL_9QEG_019

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

9QEG|1|A|U|590, 9QEG|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_019 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.129

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

9QEG|1|A|C|587
9QEG|1|A|G|588
9QEG|1|A|U|589
9QEG|1|A|U|590
9QEG|1|A|A|591
9QEG|1|A|A|592
9QEG|1|A|U|593
9QEG|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL13

Chain O

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein bL21