HL_9QEG_032

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

9QEG|1|A|C|1362, 9QEG|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0675

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9QEG|1|A|G|1361
9QEG|1|A|C|1362
9QEG|1|A|U|1363
9QEG|1|A|C|1364
9QEG|1|A|G|1365
9QEG|1|A|U|1366
9QEG|1|A|C|1367

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein uL22