HL_9QEG_036

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9QEG|1|A|A|1658, 9QEG|1|A|A|1660, 9QEG|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_036 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0685

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9QEG|1|A|C|1656
9QEG|1|A|G|1657
9QEG|1|A|A|1658
9QEG|1|A|C|1659
9QEG|1|A|A|1660
9QEG|1|A|C|1661
9QEG|1|A|A|1662
9QEG|1|A|G|1663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain Q

Large ribosomal subunit protein uL22