HL_9QEG_071

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_071 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.1324

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9QEG|1|Aa|C|530
9QEG|1|Aa|A|531
9QEG|1|Aa|G|532
9QEG|1|Aa|C|533
9QEG|1|Aa|C|534
9QEG|1|Aa|G7M|535

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

Small ribosomal subunit protein uS12

Chain d

mRNA molecule