HL_9QEG_072

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_072 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1571

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9QEG|1|Aa|G|625
9QEG|1|Aa|C|626
9QEG|1|Aa|U|627
9QEG|1|Aa|C|628
9QEG|1|Aa|A|629
9QEG|1|Aa|A|630
9QEG|1|Aa|C|631

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

Small ribosomal subunit protein uS4

Chain Ap

Small ribosomal subunit protein bS16