HL_9QEG_083

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_083 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0725

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9QEG|1|Aa|C|1324
9QEG|1|Aa|U|1325
9QEG|1|Aa|G|1326
9QEG|1|Aa|C|1327
9QEG|1|Aa|A|1328
9QEG|1|Aa|A|1329
9QEG|1|Aa|C|1330
9QEG|1|Aa|U|1331
9QEG|1|Aa|C|1332
9QEG|1|Aa|G|1333

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Am

Small ribosomal subunit protein uS13

Chain An

Small ribosomal subunit protein uS14B

Chain As

Small ribosomal subunit protein uS19