HL_9QEH_009

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9QEH|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEH_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.0887

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9QEH|1|A|C|348
9QEH|1|A|U|349
9QEH|1|A|G|350
9QEH|1|A|G|351
9QEH|1|A|A|352
9QEH|1|A|A|353
9QEH|1|A|A|354
9QEH|1|A|G|355

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein uL24