HL_9QIW_015

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_015 not in the Motif Atlas

Homologous match to HL_8P9A_138

Geometric discrepancy: 0.2608

The information below is about HL_8P9A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9QIW|1|L5|G|1886
9QIW|1|L5|G|1887
9QIW|1|L5|A|1888
9QIW|1|L5|U|1889
9QIW|1|L5|G|1890
9QIW|1|L5|A|1891
9QIW|1|L5|A|1892
9QIW|1|L5|C|1893

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Guanine nucleotide-binding protein-like 3

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a