HL_9QIW_029

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9QIW|1|L5|C|2794, 9QIW|1|L5|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_029 not in the Motif Atlas

Geometric match to HL_6CB3_006

Geometric discrepancy: 0.3733

The information below is about HL_6CB3_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9QIW|1|L5|C|2792
9QIW|1|L5|G|2793
9QIW|1|L5|C|2794
9QIW|1|L5|A|2795
9QIW|1|L5|G|2796
9QIW|1|L5|C|2797
9QIW|1|L5|A|2798
9QIW|1|L5|G|2799

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39