HL_9QIW_036

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAGUACG

Length

7 nucleotides

Bulged bases

9QIW|1|L5|G|4305, 9QIW|1|L5|U|4306, 9QIW|1|L5|C|4308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_036 not in the Motif Atlas

Geometric match to HL_2ZUE_002

Geometric discrepancy: 0.3463

The information below is about HL_2ZUE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.2

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9QIW|1|L5|C|4303
9QIW|1|L5|A|4304
9QIW|1|L5|G|4305
9QIW|1|L5|U|4306
9QIW|1|L5|A|4307
9QIW|1|L5|C|4308
9QIW|1|L5|G|4309

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain CJ

Ribosome production factor 2 homolog

Chain CK

Ribosome biogenesis regulatory protein homolog