3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
9QIW|1|L5|G|4694, 9QIW|1|L5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_044 not in the Motif Atlas
Homologous match to HL_8CRE_066
Geometric discrepancy: 0.1457
The information below is about HL_8CRE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

9QIW|1|L5|C|4688
9QIW|1|L5|U|4689
9QIW|1|L5|G|4690
9QIW|1|L5|A|4691
9QIW|1|L5|A|4692
9QIW|1|L5|C|4693
9QIW|1|L5|G|4694
9QIW|1|L5|C|4695
9QIW|1|L5|C|4696
9QIW|1|L5|U|4697
9QIW|1|L5|C|4698
9QIW|1|L5|U|4699
9QIW|1|L5|A|4700
9QIW|1|L5|A|4701
9QIW|1|L5|G|4702

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CF
mRNA turnover protein 4 homolog
Chain CH
Ribosome biogenesis protein NSA2 homolog
Chain LH
60S ribosomal protein L9
Chain LO
60S ribosomal protein L13a

Coloring options:


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