3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GGAGAGGC
Length
8 nucleotides
Bulged bases
9QIW|1|L5|G|4910, 9QIW|1|L5|A|4911, 9QIW|1|L5|G|4913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9QIW_045 not in the Motif Atlas
Geometric match to HL_8P9A_180
Geometric discrepancy: 0.1169
The information below is about HL_8P9A_180
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31089.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

9QIW|1|L5|G|4907
9QIW|1|L5|G|4908
9QIW|1|L5|A|4909
9QIW|1|L5|G|4910
9QIW|1|L5|A|4911
9QIW|1|L5|G|4912
9QIW|1|L5|G|4913
9QIW|1|L5|C|4914

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CE
Protein LLP homolog
Chain LB
60S ribosomal protein L3
Chain LO
60S ribosomal protein L13a

Coloring options:


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