HL_9QJC_006

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QJC_006 not in the Motif Atlas

Homologous match to HL_9H3G_023

Geometric discrepancy: 0.1902

The information below is about HL_9H3G_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9QJC|1|1|C|732
9QJC|1|1|G|733
9QJC|1|1|C|734
9QJC|1|1|A|735
9QJC|1|1|A|736
9QJC|1|1|G|737

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

Ribosomal RNA-processing protein 1