9QJC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9QJC_001 | 1/1/382:387 | No text annotation | geometric HL_9PN5_006 HL_75660.11 | |
| HL_9QJC_003 | 1/1/599:604 | No text annotation | homologous HL_9PN5_013 HL_34789.7 | |
| HL_9QJC_004 | 1/1/640:649 | No text annotation | ||
| HL_9QJC_007 | 1/1/1347:1357 | No text annotation | homologous HL_9SUM_027 HL_40612.2 | |
| HL_9QJC_008 | 1/1/1403:1408 | No text annotation | homologous HL_9AXU_027 HL_34789.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9QJC_002 | No text annotation | ||
| HL_9QJC_005 | No text annotation | ||
| HL_9QJC_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9QJC_001 | 1/1/429:431, 1/1/628:630 | No text annotation | homologous IL_9PN5_015 IL_81485.1 | |
| IL_9QJC_003 | 1/1/511:513, 1/1/577:580 | No text annotation | geometric IL_9H3G_111 IL_84227.2 | |
| IL_9QJC_004 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_9PN5_018 IL_40132.1 | |
| IL_9QJC_005 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_9PN5_019 IL_25001.3 | |
| IL_9QJC_007 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_9PN5_020 IL_01003.7 | |
| IL_9QJC_008 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_9AXU_021 IL_87030.3 | |
| IL_9QJC_009 | 1/1/725:728, 1/1/741:745 | UAA/GAN variation | homologous IL_9PN5_022 IL_45790.4 | |
| IL_9QJC_010 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_9PN5_046 IL_08938.4 | |
| IL_9QJC_011 | 1/1/1173:1180, 1/1/1325:1326 | No text annotation | homologous IL_9AXU_046 IL_46868.2 | |
| IL_9QJC_012 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_9PN5_048 IL_97561.8 | |
| IL_9QJC_013 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | ||
| IL_9QJC_014 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_9PN5_057 IL_14190.5 | |
| IL_9QJC_015 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_9PN5_058 IL_90775.4 | |
| IL_9QJC_016 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_9PN5_059 IL_14190.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9QJC_002 | Single bulged A | ||
| IL_9QJC_006 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9QJC_002 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_9PN5_007 J3_86133.3 | |
| J3_9QJC_003 | 1/1/942:944, 1/1/1375:1379, 1/1/1427:1431 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9QJC_001 | No text annotation |
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