HL_9QLQ_024

3D structure

PDB id

9QLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with full length ARF1 - alternative State

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9QLQ|1|L5|A|1630, 9QLQ|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QLQ_024 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0353

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9QLQ|1|L5|G|1627
9QLQ|1|L5|C|1628
9QLQ|1|L5|G|1629
9QLQ|1|L5|A|1630
9QLQ|1|L5|A|1631
9QLQ|1|L5|A|1632
9QLQ|1|L5|G|1633
9QLQ|1|L5|A|1634
9QLQ|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

Large ribosomal subunit protein eL37