HL_9QOH_122

3D structure

PDB id

9QOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

9QOH|1|n2|C|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QOH_122 not in the Motif Atlas

Homologous match to HL_8WND_005

Geometric discrepancy: 0.4353

The information below is about HL_8WND_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9QOH|1|n2|G|53
9QOH|1|n2|U|54
9QOH|1|n2|U|55
9QOH|1|n2|C|56
9QOH|1|n2|G|57
9QOH|1|n2|A|58
9QOH|1|n2|U|59
9QOH|1|n2|U|60
9QOH|1|n2|C|61

Current chains

Chain n2

transfer RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L1

Large ribosomal subunit protein uL1