HL_9QQA_016

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

9QQA|1|A2|G|837, 9QQA|1|A2|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_016 not in the Motif Atlas

Geometric match to HL_8K0Y_001

Geometric discrepancy: 0.2783

The information below is about HL_8K0Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9QQA|1|A2|C|835
9QQA|1|A2|C|836
9QQA|1|A2|G|837
9QQA|1|A2|A|838
9QQA|1|A2|G|839

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Ax

40S ribosomal protein S24