9QQA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9QQA_001 | 1/A2/7:17 | No text annotation | geometric HL_8CRE_191 HL_31940.1 | |
| HL_9QQA_002 | 1/A2/69:80 | No text annotation | ||
| HL_9QQA_003 | 1/A2/156:162 | GNRA related | geometric HL_8CRE_193 HL_34789.1 | |
| HL_9QQA_005 | 1/A2/289:296 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_67772.1 | |
| HL_9QQA_007 | 1/A2/378:388 | No text annotation | ||
| HL_9QQA_008 | 1/A2/417:422 | GNRA variation | geometric HL_8CRE_199 HL_34789.1 | |
| HL_9QQA_009 | 1/A2/442:453 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_9QQA_010 | 1/A2/463:468 | UNCG | geometric HL_8P9A_200 HL_61337.1 | |
| HL_9QQA_011 | 1/A2/499:505 | No text annotation | geometric HL_8P9A_207 HL_89167.1 | |
| HL_9QQA_013 | 1/A2/570:582 | No text annotation | geometric HL_8P9A_203 HL_68749.1 | |
| HL_9QQA_014 | 1/A2/619:624 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_9QQA_015 | 1/A2/821:829 | No text annotation | geometric HL_8CRE_207 HL_11974.1 | |
| HL_9QQA_016 | 1/A2/835:839 | No text annotation | geometric HL_8K0Y_001 HL_75660.6 | |
| HL_9QQA_018 | 1/A2/958:967 | No text annotation | geometric HL_8CRE_210 HL_38491.1 | |
| HL_9QQA_019 | 1/A2/995:1000 | GNRA | geometric HL_8CRE_211 HL_34789.1 | |
| HL_9QQA_020 | 1/A2/1055:1065 | No text annotation | geometric HL_4LFB_017 HL_38491.1 | |
| HL_9QQA_021 | 1/A2/1115:1120 | No text annotation | ||
| HL_9QQA_022 | 1/A2/1142:1147 | GNRA | geometric HL_8CRE_214 HL_34789.1 | |
| HL_9QQA_023 | 1/A2/1179:1184 | GNRA | geometric HL_8ITS_002 NA | |
| HL_9QQA_024 | 1/A2/1246:1255 | No text annotation | geometric HL_8P9A_215 HL_97521.1 | |
| HL_9QQA_025 | 1/A2/1296:1305 | GNRA wlth extra near cWW | geometric HL_8CRE_217 HL_45359.1 | |
| HL_9QQA_026 | 1/A2/1354:1359 | GNRA | geometric HL_4V9F_065 HL_34789.1 | |
| HL_9QQA_027 | 1/A2/1367:1374 | T-loop related | geometric HL_8CRE_219 HL_63894.1 | |
| HL_9QQA_028 | 1/A2/1418:1423 | No text annotation | ||
| HL_9QQA_029 | 1/A2/1461:1467 | No text annotation | geometric HL_8CRE_221 HL_76371.1 | |
| HL_9QQA_030 | 1/A2/1566:1571 | GNRA | geometric HL_3E5C_002 HL_34789.1 | |
| HL_9QQA_031 | 1/A2/1615:1626 | No text annotation | geometric HL_8CRE_223 HL_50951.1 | |
| HL_9QQA_032 | 1/A2/1659:1667 | No text annotation | ||
| HL_9QQA_034 | 1/A2/1848:1853 | GNRA | geometric HL_5J7L_031 NA | |
| HL_9QQA_035 | 1/AT/12:23 | No text annotation | ||
| HL_9QQA_036 | 1/AT/31:39 | tRNA anticodon loop | geometric HL_4TUE_034 NA | |
| HL_9QQA_037 | 1/AT/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5AXM_003 HL_33597.1 | |
| HL_9QQA_038 | 1/B5/37:44 | No text annotation | geometric HL_8P9A_113 HL_48677.1 | |
| HL_9QQA_039 | 1/B5/68:73 | No text annotation | geometric HL_8CRE_002 NA | |
| HL_9QQA_040 | 1/B5/89:95 | No text annotation | geometric HL_4WF9_008 HL_76371.1 | |
| HL_9QQA_041 | 1/B5/131:137 | No text annotation | geometric HL_7VTI_001 NA | |
| HL_9QQA_042 | 1/B5/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_3VJR_001 HL_13999.1 | |
| HL_9QQA_043 | 1/B5/222:226 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_9QQA_044 | 1/B5/230:238 | No text annotation | ||
| HL_9QQA_045 | 1/B5/289:298 | T-loop related | geometric HL_8P9A_120 HL_63894.1 | |
| HL_9QQA_046 | 1/B5/314:323 | No text annotation | geometric HL_8CRE_009 NA | |
| HL_9QQA_047 | 1/B5/368:373 | GNRA | geometric HL_4WFL_003 HL_34789.1 | |
| HL_9QQA_048 | 1/B5/393:398 | GNRA | geometric HL_5J7L_152 NA | |
| HL_9QQA_050 | 1/B5/862:870 | No text annotation | geometric HL_4FEN_001 HL_32811.1 | |
| HL_9QQA_051 | 1/B5/1069:1074 | Mini UNCG | geometric HL_8SP9_002 NA | |
| HL_9QQA_052 | 1/B5/1261:1270 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 NA | |
| HL_9QQA_053 | 1/B5/1308:1317 | No text annotation | ||
| HL_9QQA_054 | 1/B5/1333:1338 | GNRA | geometric HL_8CRE_015 NA | |
| HL_9QQA_055 | 1/B5/1392:1403 | No text annotation | ||
| HL_9QQA_056 | 1/B5/1435:1439 | Mini UNCG | geometric HL_8XZL_001 HL_12111.1 | |
| HL_9QQA_057 | 1/B5/1516:1521 | GNRA | geometric HL_1Q96_001 HL_34789.1 | |
| HL_9QQA_058 | 1/B5/1548:1557 | No text annotation | geometric HL_8CRE_019 NA | |
| HL_9QQA_059 | 1/B5/1582:1590 | No text annotation | geometric HL_8P9A_133 HL_79004.1 | |
| HL_9QQA_060 | 1/B5/1630:1635 | No text annotation | ||
| HL_9QQA_062 | 1/B5/1755:1762 | No text annotation | ||
| HL_9QQA_063 | 1/B5/1803:1809 | GNRA | geometric HL_7KKV_003 HL_34789.1 | |
| HL_9QQA_064 | 1/B5/1825:1832 | No text annotation | geometric HL_8P9A_138 HL_47171.1 | |
| HL_9QQA_067 | 1/B5/2100:2104 | No text annotation | ||
| HL_9QQA_068 | 1/B5/2160:2165 | GNRA | geometric HL_8CRE_029 NA | |
| HL_9QQA_069 | 1/B5/2219:2227 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 NA | |
| HL_9QQA_070 | 1/B5/2263:2269 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_9QQA_071 | 1/B5/2301:2306 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_9QQA_072 | 1/B5/2312:2314 | No text annotation | ||
| HL_9QQA_074 | 1/B5/2366:2375 | No text annotation | geometric HL_4V9F_037 HL_77449.1 | |
| HL_9QQA_076 | 1/B5/2421:2426 | GNRA | geometric HL_8P9A_147 HL_34789.1 | |
| HL_9QQA_077 | 1/B5/2467:2475 | Pseudoknot geometry | geometric HL_8P9A_148 HL_68642.1 | |
| HL_9QQA_078 | 1/B5/2507:2513 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_9QQA_079 | 1/B5/2548:2553 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_9QQA_080 | 1/B5/2581:2585 | Mini UNCG with extended bulge | geometric HL_2B3J_003 NA | |
| HL_9QQA_081 | 1/B5/2635:2642 | No text annotation | geometric HL_8CRE_040 NA | |
| HL_9QQA_082 | 1/B5/2653:2659 | GNRA | geometric HL_8P9A_153 HL_34789.1 | |
| HL_9QQA_083 | 1/B5/2715:2720 | UNCG | geometric HL_8P9A_154 HL_61337.1 | |
| HL_9QQA_084 | 1/B5/3346:3350 | No text annotation | ||
| HL_9QQA_085 | 1/B5/3371:3381 | No text annotation | geometric HL_8CRE_044 NA | |
| HL_9QQA_086 | 1/B5/3400:3406 | GNRA variation | geometric HL_4QK9_001 NA | |
| HL_9QQA_087 | 1/B5/3456:3461 | GNRA | geometric HL_3SUX_002 HL_34789.1 | |
| HL_9QQA_088 | 1/B5/3489:3499 | No text annotation | geometric HL_8CRE_047 NA | |
| HL_9QQA_089 | 1/B5/3528:3536 | No text annotation | geometric HL_8CRE_048 NA | |
| HL_9QQA_090 | 1/B5/3605:3614 | No text annotation | geometric HL_8CRE_049 NA | |
| HL_9QQA_092 | 1/B5/3939:3947 | No text annotation | geometric HL_4V9F_055 HL_11974.1 | |
| HL_9QQA_093 | 1/B5/3956:3968 | No text annotation | geometric HL_4WF9_050 HL_02042.1 | |
| HL_9QQA_094 | 1/B5/3996:4004 | No text annotation | geometric HL_4V9F_057 HL_02452.1 | |
| HL_9QQA_095 | 1/B5/4016:4023 | Pseudoknot geometry | geometric HL_8CRE_056 NA | |
| HL_9QQA_096 | 1/B5/4047:4055 | No text annotation | geometric HL_8CRE_057 NA | |
| HL_9QQA_097 | 1/B5/4067:4072 | GNRA | geometric HL_8CRE_058 NA | |
| HL_9QQA_098 | 1/B5/4098:4108 | No text annotation | geometric HL_7JRT_001 NA | |
| HL_9QQA_099 | 1/B5/4163:4171 | No text annotation | geometric HL_8P9A_172 HL_52011.1 | |
| HL_9QQA_100 | 1/B5/4220:4227 | GNRA variation | geometric HL_8P9A_173 HL_46665.1 | |
| HL_9QQA_101 | 1/B5/4243:4249 | No text annotation | geometric HL_8P9A_174 HL_48677.1 | |
| HL_9QQA_102 | 1/B5/4286:4291 | GNRA | geometric HL_8P9A_175 HL_34789.1 | |
| HL_9QQA_103 | 1/B5/4349:4354 | GNRA | geometric HL_8Z8U_001 NA | |
| HL_9QQA_104 | 1/B5/4392:4397 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_9QQA_105 | 1/B5/4434:4448 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_9QQA_106 | 1/B5/4645:4654 | No text annotation | ||
| HL_9QQA_107 | 1/B5/4714:4722 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_9QQA_108 | 1/B5/4760:4767 | No text annotation | ||
| HL_9QQA_109 | 1/B7/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_9QQA_110 | 1/B7/36:41 | No text annotation | geometric HL_8OI5_069 HL_59381.1 | |
| HL_9QQA_111 | 1/B7/86:91 | GNRA | geometric HL_9DXL_001 HL_34789.1 | |
| HL_9QQA_112 | 1/B8/47:56 | No text annotation | geometric HL_8CRE_074 NA | |
| HL_9QQA_113 | 1/B8/68:90 | No text annotation | ||
| HL_9QQA_114 | 1/B8/107:112 | No text annotation | geometric HL_8CRE_076 NA | |
| HL_9QQA_115 | 1/B8/122:128 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9QQA_004 | GNRA | ||
| HL_9QQA_006 | No text annotation | ||
| HL_9QQA_012 | No text annotation | ||
| HL_9QQA_017 | No text annotation | ||
| HL_9QQA_033 | No text annotation | ||
| HL_9QQA_049 | UNCG | ||
| HL_9QQA_061 | No text annotation | ||
| HL_9QQA_065 | No text annotation | ||
| HL_9QQA_066 | GNRA wlth tandem sheared | ||
| HL_9QQA_073 | Mini UNCG | ||
| HL_9QQA_075 | GNRA | ||
| HL_9QQA_091 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9QQA_001 | 1/A2/23:25, 1/A2/650:652 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 NA | |
| IL_9QQA_002 | 1/A2/34:36, 1/A2/520:522 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 NA | |
| IL_9QQA_003 | 1/A2/37:40, 1/A2/515:519 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_9QQA_004 | 1/A2/41:47, 1/A2/480:482 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_9QQA_005 | 1/A2/49:51, 1/A2/477:478 | Minor groove platform | geometric IL_4LFB_004 IL_34520.1 | |
| IL_9QQA_006 | 1/A2/57:62, 1/A2/86:88 | No text annotation | geometric IL_8P9A_378 IL_61299.5 | |
| IL_9QQA_007 | 1/A2/63:68, 1/A2/81:85 | No text annotation | geometric IL_8P9A_379 IL_21667.2 | |
| IL_9QQA_008 | 1/A2/108:110, 1/A2/352:354 | Isolated non-canonical cWW pair | geometric IL_8FEQ_001 IL_71625.1 | |
| IL_9QQA_009 | 1/A2/110:115, 1/A2/349:352 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 NA | |
| IL_9QQA_010 | 1/A2/116:121, 1/A2/344:348 | No text annotation | geometric IL_8CRE_399 IL_31545.1 | |
| IL_9QQA_011 | 1/A2/145:151, 1/A2/167:174 | No text annotation | geometric IL_8CRE_400 IL_24485.1 | |
| IL_9QQA_012 | 1/A2/152:154, 1/A2/164:166 | Isolated cWH basepair | geometric IL_6RA4_002 NA | |
| IL_9QQA_013 | 1/A2/188:192, 1/A2/207:211 | Double sheared with non-canonical cWW | geometric IL_1U6B_002 IL_87767.1 | |
| IL_9QQA_014 | 1/A2/216:219, 1/A2/303:310 | No text annotation | ||
| IL_9QQA_015 | 1/A2/313:315, 1/A2/337:338 | Single bulged A | geometric IL_8P9A_388 IL_14190.1 | |
| IL_9QQA_016 | 1/A2/318:320, 1/A2/333:334 | Single stack bend | geometric IL_8OI5_137 IL_15011.1 | |
| IL_9QQA_017 | 1/A2/360:365, 1/A2/397:404 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_9QQA_018 | 1/A2/367:372, 1/A2/394:395 | No text annotation | geometric IL_8CRE_409 IL_01372.1 | |
| IL_9QQA_019 | 1/A2/412:414, 1/A2/425:430 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_9QQA_020 | 1/A2/438:440, 1/A2/455:457 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.1 | |
| IL_9QQA_021 | 1/A2/460:462, 1/A2/469:471 | No text annotation | geometric IL_8CRE_412 IL_42997.4 | |
| IL_9QQA_022 | 1/A2/488:490, 1/A2/512:513 | Single bulged U | geometric IL_4LFB_014 IL_97561.1 | |
| IL_9QQA_023 | 1/A2/492:497, 1/A2/507:510 | No text annotation | ||
| IL_9QQA_024 | 1/A2/530:531, 1/A2/555:557 | Single bulged A | geometric IL_4WF9_006 IL_14190.1 | |
| IL_9QQA_025 | 1/A2/536:538, 1/A2/547:550 | No text annotation | ||
| IL_9QQA_026 | 1/A2/564:566, 1/A2/586:593 | No text annotation | geometric IL_8CRE_418 IL_02511.1 | |
| IL_9QQA_027 | 1/A2/567:570, 1/A2/582:585 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_71194.1 | |
| IL_9QQA_028 | 1/A2/600:607, 1/A2/637:638 | SSU/LSU pseudoknot | geometric IL_8CRE_421 IL_11411.1 | |
| IL_9QQA_029 | 1/A2/607:609, 1/A2/636:637 | No text annotation | geometric IL_8CRE_422 IL_97561.1 | |
| IL_9QQA_030 | 1/A2/612:618, 1/A2/625:633 | No text annotation | geometric IL_8CRE_423 IL_52042.1 | |
| IL_9QQA_031 | 1/A2/664:666, 1/A2/1163:1165 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9QQA_032 | 1/A2/666:672, 1/A2/1162:1163 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_9QQA_033 | 1/A2/674:676, 1/A2/1031:1033 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.1 | |
| IL_9QQA_034 | 1/A2/677:681, 1/A2/1026:1030 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_9QQA_037 | 1/A2/803:804, 1/A2/861:864 | No text annotation | geometric IL_8CRE_428 IL_73108.1 | |
| IL_9QQA_038 | 1/A2/806:816, 1/A2/850:859 | No text annotation | ||
| IL_9QQA_039 | 1/A2/834:835, 1/A2/839:842 | No text annotation | geometric IL_8P9A_336 IL_44609.1 | |
| IL_9QQA_040 | 1/A2/875:877, 1/A2/911:913 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_01003.1 | |
| IL_9QQA_041 | 1/A2/878:880, 1/A2/908:910 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_01003.1 | |
| IL_9QQA_042 | 1/A2/923:924, 1/A2/1020:1023 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.1 | |
| IL_9QQA_043 | 1/A2/926:927, 1/A2/1016:1018 | Single bulged U | geometric IL_6UFH_004 NA | |
| IL_9QQA_044 | 1/A2/929:932, 1/A2/1011:1014 | Tandem non-canonical cWW pairs | geometric IL_8CRE_433 IL_15225.1 | |
| IL_9QQA_045 | 1/A2/932:936, 1/A2/1008:1011 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.1 | |
| IL_9QQA_046 | 1/A2/943:946, 1/A2/982:985 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.1 | |
| IL_9QQA_047 | 1/A2/953:957, 1/A2/968:975 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_9QQA_048 | 1/A2/1043:1048, 1/A2/1072:1074 | No text annotation | geometric IL_8P9A_423 IL_31359.1 | |
| IL_9QQA_049 | 1/A2/1048:1052, 1/A2/1068:1072 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_9QQA_050 | 1/A2/1092:1094, 1/A2/1153:1159 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_9QQA_051 | 1/A2/1099:1104, 1/A2/1130:1135 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9QQA_052 | 1/A2/1109:1111, 1/A2/1124:1125 | Minor groove platform | geometric IL_8P9A_401 IL_34520.1 | |
| IL_9QQA_053 | 1/A2/1169:1176, 1/A2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_84044.1 | |
| IL_9QQA_054 | 1/A2/1204:1205, 1/A2/1695:1697 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_9QQA_055 | 1/A2/1207:1209, 1/A2/1692:1693 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9QQA_056 | 1/A2/1215:1218, 1/A2/1682:1686 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_9QQA_057 | 1/A2/1231:1233, 1/A2/1527:1529 | Isolated non-canonical cWW pair | geometric IL_8CRE_446 IL_01003.1 | |
| IL_9QQA_058 | 1/A2/1236:1237, 1/A2/1522:1524 | Minor groove platform | geometric IL_8CRE_447 IL_34520.1 | |
| IL_9QQA_059 | 1/A2/1271:1273, 1/A2/1511:1513 | Isolated non-canonical cWW pair | geometric IL_2ZKO_001 IL_01003.1 | |
| IL_9QQA_060 | 1/A2/1282:1291, 1/A2/1310:1317 | No text annotation | ||
| IL_9QQA_062 | 1/A2/1326:1328, 1/A2/1503:1504 | Single bulged U | geometric IL_3MEI_001 NA | |
| IL_9QQA_063 | 1/A2/1330:1334, 1/A2/1499:1501 | No text annotation | geometric IL_8P9A_438 IL_82453.1 | |
| IL_9QQA_064 | 1/A2/1330:1336, 1/A2/1493:1501 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9QQA_065 | 1/A2/1334:1336, 1/A2/1493:1499 | No text annotation | geometric IL_8P9A_440 IL_93811.1 | |
| IL_9QQA_066 | 1/A2/1338:1339, 1/A2/1489:1491 | Single bulged A | geometric IL_8CRE_455 IL_14190.1 | |
| IL_9QQA_067 | 1/A2/1348:1350, 1/A2/1381:1383 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.1 | |
| IL_9QQA_068 | 1/A2/1364:1366, 1/A2/1375:1376 | Minor groove platform | geometric IL_8CRE_457 IL_34520.1 | |
| IL_9QQA_069 | 1/A2/1396:1400, 1/A2/1448:1451 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 NA | |
| IL_9QQA_070 | 1/A2/1403:1406, 1/A2/1442:1445 | No text annotation | geometric IL_8P9A_445 IL_78800.2 | |
| IL_9QQA_071 | 1/A2/1409:1410, 1/A2/1433:1439 | No text annotation | ||
| IL_9QQA_072 | 1/A2/1413:1414, 1/A2/1428:1430 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9QQA_073 | 1/A2/1417:1418, 1/A2/1423:1425 | No text annotation | ||
| IL_9QQA_074 | 1/A2/1538:1540, 1/A2/1595:1597 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.1 | |
| IL_9QQA_075 | 1/A2/1542:1551, 1/A2/1583:1593 | No text annotation | ||
| IL_9QQA_076 | 1/A2/1551:1559, 1/A2/1578:1583 | No text annotation | ||
| IL_9QQA_077 | 1/A2/1561:1563, 1/A2/1574:1576 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.1 | |
| IL_9QQA_078 | 1/A2/1605:1611, 1/A2/1630:1636 | No text annotation | ||
| IL_9QQA_079 | 1/A2/1701:1703, 1/A2/1834:1837 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_9QQA_080 | 1/A2/1703:1706, 1/A2/1830:1834 | No text annotation | geometric IL_5J7L_059 NA | |
| IL_9QQA_081 | 1/A2/1707:1709, 1/A2/1827:1829 | Isolated non-canonical cWW pair | geometric IL_5J7L_363 NA | |
| IL_9QQA_082 | 1/A2/1709:1712, 1/A2/1823:1827 | No text annotation | geometric IL_8CRE_401 IL_15043.1 | |
| IL_9QQA_083 | 1/A2/1715:1717, 1/A2/1818:1820 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_01003.1 | |
| IL_9QQA_084 | 1/A2/1718:1721, 1/A2/1814:1817 | Double sheared | geometric IL_8CRE_471 IL_58355.1 | |
| IL_9QQA_085 | 1/A2/1721:1723, 1/A2/1813:1814 | No text annotation | geometric IL_8CRE_472 IL_97561.1 | |
| IL_9QQA_086 | 1/A2/1730:1732, 1/A2/1804:1806 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.1 | |
| IL_9QQA_087 | 1/A2/1734:1737, 1/A2/1799:1802 | Double sheared | geometric IL_8CRE_474 IL_58355.1 | |
| IL_9QQA_088 | 1/A2/1740:1742, 1/A2/1794:1796 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_9QQA_089 | 1/A2/1743:1747, 1/A2/1789:1793 | Triple sheared | geometric IL_9DFE_075 IL_15190.1 | |
| IL_9QQA_090 | 1/A2/1751:1752, 1/A2/1783:1785 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9QQA_092 | 1/B5/6:7, 1/B8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9QQA_093 | 1/B5/12:14, 1/B8/143:144 | No text annotation | geometric IL_8CRE_003 NA | |
| IL_9QQA_094 | 1/B5/16:18, 1/B8/139:141 | Isolated non-canonical cWW pair | geometric IL_7ECN_001 IL_01003.1 | |
| IL_9QQA_095 | 1/B5/26:27, 1/B5/55:57 | Single stack bend | geometric IL_4WF9_007 IL_15011.1 | |
| IL_9QQA_096 | 1/B5/30:37, 1/B5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_9QQA_097 | 1/B5/81:88, 1/B5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_1JBR_001 NA | |
| IL_9QQA_098 | 1/B5/118:121, 1/B5/152:153 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_9QQA_099 | 1/B5/118:122, 1/B5/147:153 | No text annotation | ||
| IL_9QQA_100 | 1/B5/121:122, 1/B5/147:152 | No text annotation | geometric IL_4V9F_009 IL_10396.1 | |
| IL_9QQA_101 | 1/B5/125:126, 1/B5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9QQA_102 | 1/B5/168:173, 1/B5/263:267 | No text annotation | ||
| IL_9QQA_104 | 1/B5/184:189, 1/B5/252:253 | No text annotation | ||
| IL_9QQA_105 | 1/B5/195:196, 1/B5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9QQA_106 | 1/B5/199:201, 1/B5/214:215 | Single bulged U | geometric IL_4V9F_013 IL_97561.1 | |
| IL_9QQA_107 | 1/B5/339:342, 1/B8/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_9QQA_108 | 1/B5/348:350, 1/B8/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_9QQA_109 | 1/B5/387:390, 1/B5/401:414 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_9QQA_110 | 1/B5/415:421, 1/B8/13:19 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.1 | |
| IL_9QQA_111 | 1/B5/443:446, 1/B5/1244:1248 | No text annotation | ||
| IL_9QQA_112 | 1/B5/448:450, 1/B5/1241:1242 | Single bulged C | geometric IL_4C7O_003 NA | |
| IL_9QQA_113 | 1/B5/459:460, 1/B5/689:691 | Single bulged C | geometric IL_1S03_002 IL_05642.1 | |
| IL_9QQA_114 | 1/B5/462:464, 1/B5/685:687 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.1 | |
| IL_9QQA_115 | 1/B5/466:472, 1/B5/676:683 | No text annotation | ||
| IL_9QQA_116 | 1/B5/481:483, 1/B5/666:667 | Single bulged U | geometric IL_8TQX_001 NA | |
| IL_9QQA_117 | 1/B5/483:486, 1/B5/665:666 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_9QQA_118 | 1/B5/488:489, 1/B5/659:663 | Multiple bulged bases | geometric IL_8P9A_381 IL_71421.1 | |
| IL_9QQA_119 | 1/B5/492:494, 1/B5/655:656 | Single bulged U | geometric IL_8TQX_002 NA | |
| IL_9QQA_120 | 1/B5/498:500, 1/B5/650:651 | No text annotation | ||
| IL_9QQA_121 | 1/B5/501:506, 1/B5/648:649 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_9QQA_122 | 1/B5/510:512, 1/B5/643:644 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_9QQA_125 | 1/B5/703:704, 1/B5/1230:1232 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9QQA_126 | 1/B5/717:718, 1/B5/842:845 | Multiple bulged bases | geometric IL_7Q80_003 IL_44609.1 | |
| IL_9QQA_127 | 1/B5/721:725, 1/B5/838:839 | No text annotation | ||
| IL_9QQA_128 | 1/B5/726:729, 1/B5/827:837 | No text annotation | ||
| IL_9QQA_129 | 1/B5/731:734, 1/B5/822:825 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_9QQA_130 | 1/B5/740:747, 1/B5/808:816 | No text annotation | geometric IL_8CRE_022 NA | |
| IL_9QQA_132 | 1/B5/988:989, 1/B5/1123:1125 | Single bulged A | geometric IL_9C75_002 IL_14190.1 | |
| IL_9QQA_133 | 1/B5/997:999, 1/B5/1104:1108 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.4 | |
| IL_9QQA_134 | 1/B5/1001:1002, 1/B5/1100:1102 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9QQA_135 | 1/B5/1007:1009, 1/B5/1093:1095 | Isolated non-canonical cWW pair | geometric IL_9D5J_002 IL_01003.1 | |
| IL_9QQA_137 | 1/B5/1064:1066, 1/B5/1077:1079 | Isolated cWH basepair | geometric IL_3W3S_003 NA | |
| IL_9QQA_139 | 1/B5/1301:1304, 1/B5/1323:1326 | No text annotation | ||
| IL_9QQA_140 | 1/B5/1301:1305, 1/B5/1320:1326 | No text annotation | ||
| IL_9QQA_141 | 1/B5/1304:1305, 1/B5/1320:1323 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_9QQA_142 | 1/B5/1380:1384, 1/B5/1410:1415 | No text annotation | geometric IL_1M5K_001 IL_47352.1 | |
| IL_9QQA_143 | 1/B5/1386:1389, 1/B5/1405:1408 | Double sheared | geometric IL_9BZC_001 IL_58355.1 | |
| IL_9QQA_144 | 1/B5/1390:1392, 1/B5/1403:1404 | Single bulged C | geometric IL_6XKO_001 IL_05642.1 | |
| IL_9QQA_145 | 1/B5/1422:1423, 1/B5/1451:1453 | Single bulged A | geometric IL_8P9A_252 IL_14190.1 | |
| IL_9QQA_146 | 1/B5/1429:1431, 1/B5/1444:1445 | Single base bend | geometric IL_5IBB_340 NA | |
| IL_9QQA_147 | 1/B5/1434:1435, 1/B5/1439:1441 | No text annotation | ||
| IL_9QQA_148 | 1/B5/1475:1477, 1/B5/1610:1612 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_01003.1 | |
| IL_9QQA_149 | 1/B5/1477:1481, 1/B5/1603:1610 | No text annotation | geometric IL_8P9A_256 IL_73855.1 | |
| IL_9QQA_150 | 1/B5/1500:1501, 1/B5/1567:1569 | Single bulged A | geometric IL_8CRE_031 NA | |
| IL_9QQA_151 | 1/B5/1505:1506, 1/B5/1531:1533 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_9QQA_152 | 1/B5/1506:1510, 1/B5/1527:1531 | Triple sheared | geometric IL_4V9F_027 IL_15190.1 | |
| IL_9QQA_153 | 1/B5/1541:1544, 1/B5/1560:1562 | No text annotation | geometric IL_8CRE_034 NA | |
| IL_9QQA_154 | 1/B5/1545:1547, 1/B5/1558:1559 | Single bulged U | geometric IL_8P9A_260 IL_97561.1 | |
| IL_9QQA_155 | 1/B5/1579:1581, 1/B5/1591:1595 | No text annotation | geometric IL_8CRE_036 NA | |
| IL_9QQA_156 | 1/B5/1626:1628, 1/B5/1637:1639 | Isolated non-canonical cWW pair | geometric IL_8CRE_037 NA | |
| IL_9QQA_157 | 1/B5/1641:1643, 1/B5/1787:1790 | No text annotation | ||
| IL_9QQA_158 | 1/B5/1649:1660, 1/B5/1780:1781 | No text annotation | ||
| IL_9QQA_159 | 1/B5/1662:1664, 1/B5/1777:1778 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_9QQA_160 | 1/B5/1671:1677, 1/B5/1729:1736 | No text annotation | ||
| IL_9QQA_161 | 1/B5/1678:1683, 1/B5/1725:1728 | C-loop with bulged stacked A's | geometric IL_8CRE_043 NA | |
| IL_9QQA_162 | 1/B5/1685:1688, 1/B5/1720:1723 | Tandem non-canonical cWW pairs | geometric IL_8CRE_044 NA | |
| IL_9QQA_163 | 1/B5/1688:1690, 1/B5/1718:1720 | Isolated non-canonical cWW pair | geometric IL_8P9A_354 IL_01003.1 | |
| IL_9QQA_164 | 1/B5/1692:1695, 1/B5/1715:1716 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_73108.1 | |
| IL_9QQA_166 | 1/B5/1753:1755, 1/B5/1762:1763 | No text annotation | geometric IL_8CRE_048 NA | |
| IL_9QQA_167 | 1/B5/1797:1799, 1/B5/1813:1815 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_01003.1 | |
| IL_9QQA_169 | 1/B5/1844:1848, 1/B5/2006:2010 | UAA/GAN | geometric IL_8P9A_276 IL_08938.1 | |
| IL_9QQA_170 | 1/B5/1850:1857, 1/B5/2003:2004 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_9QQA_171 | 1/B5/1857:1859, 1/B5/2002:2003 | Single bulged G | geometric IL_8TSV_002 NA | |
| IL_9QQA_172 | 1/B5/1859:1861, 1/B5/2001:2002 | No text annotation | ||
| IL_9QQA_173 | 1/B5/1865:1872, 1/B5/1992:1997 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_9QQA_174 | 1/B5/1872:1883, 1/B5/1977:1992 | No text annotation | geometric IL_8P9A_280 IL_34501.1 | |
| IL_9QQA_175 | 1/B5/1885:1887, 1/B5/1974:1975 | Single bulged U | geometric IL_8P9A_281 IL_97561.1 | |
| IL_9QQA_176 | 1/B5/1896:1904, 1/B5/1961:1965 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_9QQA_179 | 1/B5/2022:2024, 1/B5/2115:2116 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_9QQA_180 | 1/B5/2133:2135, 1/B5/2185:2188 | No text annotation | geometric IL_8CRE_061 NA | |
| IL_9QQA_181 | 1/B5/2142:2144, 1/B5/2177:2178 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_9QQA_182 | 1/B5/2145:2152, 1/B5/2172:2176 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_9QQA_183 | 1/B5/2155:2157, 1/B5/2168:2169 | Single bulged A | geometric IL_7DLZ_001 NA | |
| IL_9QQA_184 | 1/B5/2201:2207, 1/B5/3590:3595 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 NA | |
| IL_9QQA_185 | 1/B5/2249:2252, 1/B5/2626:2627 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.1 | |
| IL_9QQA_186 | 1/B5/2258:2262, 1/B5/2270:2272 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_9QQA_187 | 1/B5/2289:2293, 1/B5/2352:2357 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_9QQA_188 | 1/B5/2320:2322, 1/B5/2342:2343 | Minor groove platform | geometric IL_8P9A_401 IL_34520.1 | |
| IL_9QQA_189 | 1/B5/2385:2390, 1/B5/2615:2617 | No text annotation | ||
| IL_9QQA_190 | 1/B5/2392:2393, 1/B5/2611:2613 | Single bulged U | geometric IL_2R8S_004 IL_97561.1 | |
| IL_9QQA_191 | 1/B5/2432:2436, 1/B5/2595:2599 | Triple sheared | geometric IL_9DFE_075 IL_15190.1 | |
| IL_9QQA_192 | 1/B5/2456:2457, 1/B5/2567:2569 | Single bulged A | geometric IL_3B31_001 IL_14190.1 | |
| IL_9QQA_193 | 1/B5/2457:2458, 1/B5/2565:2567 | Single stack bend | geometric IL_8CRE_075 NA | |
| IL_9QQA_194 | 1/B5/2489:2491, 1/B5/2528:2531 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9QQA_195 | 1/B5/2494:2496, 1/B5/2524:2525 | Single bulged G | geometric IL_6TFF_002 IL_28408.1 | |
| IL_9QQA_196 | 1/B5/2499:2505, 1/B5/2515:2521 | No text annotation | geometric IL_8P9A_301 IL_93476.1 | |
| IL_9QQA_197 | 1/B5/2547:2548, 1/B5/2553:2555 | No text annotation | ||
| IL_9QQA_198 | 1/B5/2675:2681, 1/B5/3582:3585 | No text annotation | geometric IL_8P9A_302 IL_89862.1 | |
| IL_9QQA_199 | 1/B5/2687:2689, 1/B5/3574:3576 | No text annotation | geometric IL_8CRE_080 NA | |
| IL_9QQA_200 | 1/B5/2690:2693, 1/B5/3572:3573 | No text annotation | geometric IL_8CRE_081 NA | |
| IL_9QQA_201 | 1/B5/2690:2698, 1/B5/3569:3573 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_9QQA_202 | 1/B5/2693:2698, 1/B5/3569:3572 | No text annotation | geometric IL_8CRE_083 NA | |
| IL_9QQA_203 | 1/B5/2710:2715, 1/B5/2720:2726 | No text annotation | geometric IL_8CRE_084 NA | |
| IL_9QQA_204 | 1/B5/2732:2734, 1/B5/3342:3344 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 NA | |
| IL_9QQA_205 | 1/B5/2739:2740, 1/B5/3334:3337 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_9QQA_206 | 1/B5/3364:3365, 1/B5/3559:3561 | Single bulged A | geometric IL_5J7L_312 NA | |
| IL_9QQA_207 | 1/B5/3392:3397, 1/B5/3409:3416 | No text annotation | geometric IL_8P9A_311 IL_14684.1 | |
| IL_9QQA_208 | 1/B5/3432:3435, 1/B5/3481:3482 | Minor groove platform, major groove intercalation | geometric IL_8P9A_312 IL_73108.1 | |
| IL_9QQA_209 | 1/B5/3436:3437, 1/B5/3477:3480 | No text annotation | geometric IL_8CRE_090 NA | |
| IL_9QQA_210 | 1/B5/3440:3442, 1/B5/3473:3474 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_9QQA_211 | 1/B5/3442:3446, 1/B5/3471:3473 | No text annotation | geometric IL_8CRE_092 NA | |
| IL_9QQA_212 | 1/B5/3447:3453, 1/B5/3464:3470 | No text annotation | geometric IL_8P9A_316 IL_65359.1 | |
| IL_9QQA_213 | 1/B5/3512:3513, 1/B5/3543:3546 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_9QQA_214 | 1/B5/3513:3524, 1/B5/3540:3543 | No text annotation | geometric IL_8CRE_095 NA | |
| IL_9QQA_215 | 1/B5/3627:3630, 1/B5/4309:4311 | No text annotation | geometric IL_8P9A_319 IL_75527.1 | |
| IL_9QQA_216 | 1/B5/3632:3634, 1/B5/4304:4307 | No text annotation | geometric IL_8CRE_097 NA | |
| IL_9QQA_217 | 1/B5/3645:3647, 1/B5/4134:4135 | No text annotation | geometric IL_8CRE_098 NA | |
| IL_9QQA_218 | 1/B5/3648:3649, 1/B5/4130:4133 | Minor groove platform | geometric IL_8P9A_322 IL_34520.1 | |
| IL_9QQA_219 | 1/B5/3659:3661, 1/B5/3927:3930 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_9QQA_221 | 1/B5/3810:3816, 1/B5/3907:3910 | No text annotation | geometric IL_8CRE_106 NA | |
| IL_9QQA_223 | 1/B5/3861:3863, 1/B5/3895:3897 | Isolated cWH basepair | geometric IL_4KTG_005 NA | |
| IL_9QQA_225 | 1/B5/3937:3938, 1/B5/3948:3950 | Single bulged A | geometric IL_8P9A_325 IL_14190.1 | |
| IL_9QQA_226 | 1/B5/4037:4039, 1/B5/4063:4064 | Single bulged A | geometric IL_7MKY_001 IL_14190.1 | |
| IL_9QQA_227 | 1/B5/4041:4044, 1/B5/4058:4061 | No text annotation | geometric IL_7WIE_001 IL_15043.1 | |
| IL_9QQA_228 | 1/B5/4093:4096, 1/B5/4110:4111 | Single stack bend | geometric IL_8P9A_328 IL_15011.1 | |
| IL_9QQA_229 | 1/B5/4146:4149, 1/B5/4186:4190 | No text annotation | geometric IL_8CRE_111 NA | |
| IL_9QQA_230 | 1/B5/4149:4151, 1/B5/4185:4186 | No text annotation | geometric IL_8P9A_331 IL_46637.1 | |
| IL_9QQA_231 | 1/B5/4151:4153, 1/B5/4181:4185 | No text annotation | geometric IL_8P9A_332 IL_36931.1 | |
| IL_9QQA_232 | 1/B5/4158:4162, 1/B5/4172:4176 | Double sheared with non-canonical cWW | geometric IL_8CRE_114 NA | |
| IL_9QQA_233 | 1/B5/4199:4200, 1/B5/4272:4274 | No text annotation | geometric IL_8P9A_334 IL_46637.1 | |
| IL_9QQA_234 | 1/B5/4202:4204, 1/B5/4266:4270 | Isolated non-canonical cWW with bulges | geometric IL_8P9A_335 IL_68118.1 | |
| IL_9QQA_235 | 1/B5/4204:4205, 1/B5/4263:4266 | No text annotation | geometric IL_8P9A_336 IL_44609.1 | |
| IL_9QQA_236 | 1/B5/4212:4214, 1/B5/4235:4237 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_9QQA_237 | 1/B5/4212:4216, 1/B5/4231:4237 | No text annotation | ||
| IL_9QQA_238 | 1/B5/4214:4216, 1/B5/4231:4235 | No text annotation | ||
| IL_9QQA_239 | 1/B5/4241:4243, 1/B5/4249:4251 | Isolated non-canonical cWW pair | geometric IL_8P9A_340 IL_01003.1 | |
| IL_9QQA_240 | 1/B5/4283:4284, 1/B5/4293:4295 | Single bulged A | geometric IL_8P9A_399 IL_14190.1 | |
| IL_9QQA_241 | 1/B5/4326:4328, 1/B5/4467:4469 | Isolated cWH basepair | geometric IL_3R1D_003 IL_10892.1 | |
| IL_9QQA_242 | 1/B5/4328:4331, 1/B5/4463:4467 | Double sheared | geometric IL_8P9A_342 IL_58355.1 | |
| IL_9QQA_243 | 1/B5/4336:4338, 1/B5/4364:4366 | Isolated non-canonical cWW pair | geometric IL_4JGN_001 IL_71625.1 | |
| IL_9QQA_244 | 1/B5/4342:4349, 1/B5/4354:4360 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 NA | |
| IL_9QQA_245 | 1/B5/4370:4375, 1/B5/4415:4419 | No text annotation | ||
| IL_9QQA_246 | 1/B5/4378:4383, 1/B5/4408:4412 | No text annotation | geometric IL_8P9A_346 IL_98200.1 | |
| IL_9QQA_247 | 1/B5/4384:4386, 1/B5/4405:4407 | Isolated cWH basepair | geometric IL_3R1E_001 NA | |
| IL_9QQA_248 | 1/B5/4387:4388, 1/B5/4401:4404 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_9QQA_249 | 1/B5/4426:4431, 1/B5/4451:4456 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_9QQA_250 | 1/B5/4486:4489, 1/B5/4697:4698 | No text annotation | geometric IL_8ZAU_001 IL_44609.1 | |
| IL_9QQA_251 | 1/B5/4490:4493, 1/B5/4693:4696 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.1 | |
| IL_9QQA_252 | 1/B5/4496:4498, 1/B5/4687:4690 | No text annotation | ||
| IL_9QQA_253 | 1/B5/4503:4513, 1/B5/4607:4616 | No text annotation | ||
| IL_9QQA_254 | 1/B5/4516:4519, 1/B5/4602:4604 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.1 | |
| IL_9QQA_255 | 1/B5/4624:4627, 1/B5/4670:4673 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 NA | |
| IL_9QQA_256 | 1/B5/4630:4635, 1/B5/4663:4667 | No text annotation | ||
| IL_9QQA_258 | 1/B5/4711:4714, 1/B5/4722:4725 | Tandem non-canonical cWW pairs | geometric IL_8CRE_135 NA | |
| IL_9QQA_259 | 1/B5/4731:4733, 1/B5/4796:4798 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.1 | |
| IL_9QQA_260 | 1/B5/4735:4736, 1/B5/4792:4794 | Single bulged C | geometric IL_1KUQ_002 IL_05642.1 | |
| IL_9QQA_261 | 1/B5/4739:4741, 1/B5/4784:4789 | No text annotation | geometric IL_8CRE_138 NA | |
| IL_9QQA_262 | 1/B5/4742:4748, 1/B5/4778:4783 | No text annotation | ||
| IL_9QQA_263 | 1/B5/4751:4753, 1/B5/4774:4775 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9QQA_264 | 1/B5/4753:4756, 1/B5/4771:4774 | Double sheared | geometric IL_4V9F_100 IL_58355.1 | |
| IL_9QQA_265 | 1/B7/15:16, 1/B7/62:64 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9QQA_266 | 1/B7/21:27, 1/B7/52:57 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
| IL_9QQA_267 | 1/B7/28:29, 1/B7/48:51 | No text annotation | geometric IL_9DFE_112 IL_73108.1 | |
| IL_9QQA_268 | 1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_9QQA_269 | 1/B7/71:78, 1/B7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
| IL_9QQA_270 | 1/B7/79:81, 1/B7/95:97 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.1 | |
| IL_9QQA_271 | 1/B7/82:85, 1/B7/92:94 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.1 | |
| IL_9QQA_272 | 1/B8/64:66, 1/B8/92:95 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9QQA_035 | Isolated non-canonical cWW pair | ||
| IL_9QQA_036 | No text annotation | ||
| IL_9QQA_061 | No text annotation | ||
| IL_9QQA_091 | No text annotation | ||
| IL_9QQA_103 | Single stack bend | ||
| IL_9QQA_123 | Major groove intercalation | ||
| IL_9QQA_124 | No text annotation | ||
| IL_9QQA_131 | No text annotation | ||
| IL_9QQA_136 | Single bulged U | ||
| IL_9QQA_138 | No text annotation | ||
| IL_9QQA_165 | Isolated non-canonical cWW pair | ||
| IL_9QQA_168 | No text annotation | ||
| IL_9QQA_177 | No text annotation | ||
| IL_9QQA_178 | No text annotation | ||
| IL_9QQA_220 | Isolated non-canonical cWW pair | ||
| IL_9QQA_222 | Single bulged C | ||
| IL_9QQA_224 | Single bulged C | ||
| IL_9QQA_257 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9QQA_001 | 1/A2/40:41, 1/A2/482:488, 1/A2/513:515 | No text annotation | geometric J3_8P9A_068 J3_58657.1 | |
| J3_9QQA_002 | 1/A2/223:238, 1/A2/281:289, 1/A2/296:299 | No text annotation | ||
| J3_9QQA_003 | 1/A2/683:686, 1/A2/918:923, 1/A2/1023:1024 | No text annotation | ||
| J3_9QQA_004 | 1/A2/683:686, 1/A2/918:924, 1/A2/1020:1024 | No text annotation | ||
| J3_9QQA_005 | 1/A2/817:820, 1/A2/830:832, 1/A2/844:849 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_9QQA_006 | 1/A2/939:942, 1/A2/986:994, 1/A2/1001:1005 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_9QQA_007 | 1/A2/1095:1097, 1/A2/1137:1141, 1/A2/1148:1152 | No text annotation | ||
| J3_9QQA_008 | 1/A2/1219:1222, 1/A2/1646:1652, 1/A2/1674:1681 | No text annotation | geometric J3_8CRE_078 J3_85722.1 | |
| J3_9QQA_009 | 1/A2/1226:1229, 1/A2/1531:1533, 1/A2/1639:1642 | No text annotation | geometric J3_4LFB_003 J3_44359.1 | |
| J3_9QQA_010 | 1/A2/1238:1245, 1/A2/1256:1267, 1/A2/1517:1521 | No text annotation | geometric J3_8CRE_080 J3_88451.1 | |
| J3_9QQA_011 | 1/A2/1273:1278, 1/A2/1321:1325, 1/A2/1505:1511 | No text annotation | geometric J3_8P9A_079 J3_87797.2 | |
| J3_9QQA_012 | 1/A2/1341:1346, 1/A2/1385:1390, 1/A2/1482:1487 | No text annotation | ||
| J3_9QQA_013 | 1/A2/1351:1352, 1/A2/1361:1364, 1/A2/1376:1380 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_9QQA_014 | 1/A2/1392:1396, 1/A2/1451:1457, 1/A2/1471:1480 | No text annotation | ||
| J3_9QQA_015 | 1/A2/1533:1537, 1/A2/1598:1605, 1/A2/1636:1639 | No text annotation | geometric J3_8CRE_086 J3_03192.1 | |
| J3_9QQA_016 | 1/B5/112:116, 1/B5/155:160, 1/B5/275:278 | No text annotation | ||
| J3_9QQA_017 | 1/B5/351:367, 1/B5/374:379, 1/B8/21:24 | No text annotation | geometric J3_8P9A_045 J3_07616.1 | |
| J3_9QQA_018 | 1/B5/380:387, 1/B5/414:415, 1/B8/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9QQA_019 | 1/B5/380:390, 1/B5/401:415, 1/B8/19:20 | No text annotation | geometric J3_8CRE_006 NA | |
| J3_9QQA_020 | 1/B5/451:455, 1/B5/695:699, 1/B5/1236:1240 | No text annotation | ||
| J3_9QQA_021 | 1/B5/1486:1492, 1/B5/1577:1579, 1/B5/1595:1598 | No text annotation | geometric J3_8P9A_049 J3_46658.1 | |
| J3_9QQA_022 | 1/B5/1501:1503, 1/B5/1535:1539, 1/B5/1564:1567 | No text annotation | geometric J3_8CRE_010 NA | |
| J3_9QQA_023 | 1/B5/1665:1666, 1/B5/1741:1745, 1/B5/1771:1776 | No text annotation | ||
| J3_9QQA_025 | 1/B5/2236:2242, 1/B5/2648:2650, 1/B5/2662:2665 | No text annotation | geometric J3_8CRE_013 NA | |
| J3_9QQA_026 | 1/B5/2245:2248, 1/B5/2628:2634, 1/B5/2643:2645 | No text annotation | geometric J3_4V9F_006 J3_76012.1 | |
| J3_9QQA_027 | 1/B5/2283:2288, 1/B5/2358:2362, 1/B5/2379:2380 | No text annotation | geometric J3_8P9A_055 J3_94309.1 | |
| J3_9QQA_028 | 1/B5/2294:2299, 1/B5/2308:2319, 1/B5/2344:2351 | No text annotation | ||
| J3_9QQA_029 | 1/B5/2394:2398, 1/B5/2415:2418, 1/B5/2600:2610 | No text annotation | ||
| J3_9QQA_030 | 1/B5/2418:2419, 1/B5/2428:2432, 1/B5/2599:2600 | No text annotation | geometric J3_8P9A_087 J3_05348.1 | |
| J3_9QQA_031 | 1/B5/2441:2445, 1/B5/2580:2581, 1/B5/2585:2590 | No text annotation | geometric J3_8P9A_058 J3_08594.1 | |
| J3_9QQA_032 | 1/B5/3669:3671, 1/B5/3802:3806, 1/B5/3914:3919 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9QQA_033 | 1/B5/3819:3822, 1/B5/3842:3857, 1/B5/3901:3904 | No text annotation | ||
| J3_9QQA_034 | 1/B5/3974:3976, 1/B5/4077:4088, 1/B5/4116:4121 | No text annotation | geometric J3_8CRE_021 NA | |
| J3_9QQA_035 | 1/B5/3987:3991, 1/B5/4009:4015, 1/B5/4024:4029 | No text annotation | ||
| J3_9QQA_036 | 1/B5/4209:4212, 1/B5/4237:4239, 1/B5/4253:4259 | No text annotation | geometric J3_8P9A_063 J3_44047.1 | |
| J3_9QQA_037 | 1/B5/4498:4501, 1/B5/4618:4622, 1/B5/4675:4687 | No text annotation | ||
| J3_9QQA_038 | 1/B5/4709:4711, 1/B5/4725:4730, 1/B5/4799:4802 | No text annotation | ||
| J3_9QQA_039 | 1/B7/9:14, 1/B7/65:66, 1/B7/109:110 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_9QQA_040 | 1/B8/44:45, 1/B8/58:64, 1/B8/95:99 | No text annotation | ||
| J4_9QQA_001 | 1/A2/98:106, 1/A2/356:358, 1/A2/406:410, 1/A2/432:433 | No text annotation | ||
| J4_9QQA_002 | 1/A2/672:674, 1/A2/1033:1038, 1/A2/1079:1090, 1/A2/1161:1162 | No text annotation | ||
| J4_9QQA_003 | 1/AT/7:10, 1/AT/25:27, 1/AT/43:49, 1/AT/65:66 | No text annotation | ||
| J4_9QQA_004 | 1/B5/111:112, 1/B5/278:283, 1/B5/304:310, 1/B5/327:330 | No text annotation | ||
| J4_9QQA_005 | 1/B5/196:199, 1/B5/215:222, 1/B5/226:228, 1/B5/240:244 | No text annotation | ||
| J4_9QQA_006 | 1/B5/706:707, 1/B5/855:861, 1/B5/871:878, 1/B5/1222:1228 | No text annotation | ||
| J4_9QQA_007 | 1/B5/883:885, 1/B5/985:987, 1/B5/1126:1127, 1/B5/1212:1217 | No text annotation | ||
| J4_9QQA_008 | 1/B5/2208:2214, 1/B5/2232:2234, 1/B5/2667:2672, 1/B5/3588:3589 | No text annotation | ||
| J4_9QQA_009 | 1/B5/2249:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2627 | No text annotation | ||
| J4_9QQA_010 | 1/B5/2252:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2626 | No text annotation | ||
| J4_9QQA_011 | 1/B5/2294:2299, 1/B5/2308:2312, 1/B5/2314:2319, 1/B5/2344:2351 | No text annotation | ||
| J4_9QQA_012 | 1/B5/2461:2462, 1/B5/2480:2485, 1/B5/2535:2541, 1/B5/2561:2562 | No text annotation | ||
| J4_9QQA_013 | 1/B5/3366:3370, 1/B5/3382:3386, 1/B5/3422:3426, 1/B5/3553:3558 | No text annotation | ||
| J4_9QQA_014 | 1/B5/3428:3430, 1/B5/3484:3485, 1/B5/3503:3512, 1/B5/3546:3551 | No text annotation | ||
| J4_9QQA_015 | 1/B5/3977:3981, 1/B5/4035:4037, 1/B5/4064:4065, 1/B5/4074:4076 | No text annotation | ||
| J4_9QQA_016 | 1/B5/3977:3981, 1/B5/4035:4039, 1/B5/4063:4065, 1/B5/4074:4076 | No text annotation | ||
| J4_9QQA_017 | 1/B5/4333:4336, 1/B5/4366:4367, 1/B5/4422:4424, 1/B5/4458:4461 | No text annotation | ||
| J5_9QQA_001 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:564, 1/A2/593:596, 1/A2/642:645 | No text annotation | ||
| J5_9QQA_002 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:566, 1/A2/586:596, 1/A2/642:645 | No text annotation | ||
| J5_9QQA_003 | 1/A2/53:56, 1/A2/89:96, 1/A2/435:437, 1/A2/458:460, 1/A2/471:475 | No text annotation | ||
| J5_9QQA_004 | 1/A2/123:129, 1/A2/183:185, 1/A2/214:215, 1/A2/311:313, 1/A2/338:342 | No text annotation | ||
| J5_9QQA_005 | 1/B5/19:21, 1/B8/35:42, 1/B8/101:106, 1/B8/113:114, 1/B8/136:138 | No text annotation | ||
| J5_9QQA_006 | 1/B5/1279:1284, 1/B5/1471:1474, 1/B5/1613:1616, 1/B5/2131:2133, 1/B5/2188:2194 | No text annotation | ||
| J5_9QQA_007 | 1/B5/2698:2706, 1/B5/2730:2731, 1/B5/3345:3346, 1/B5/3350:3358, 1/B5/3567:3569 | No text annotation | ||
| J5_9QQA_008 | 1/B5/3635:3642, 1/B5/4138:4146, 1/B5/4190:4199, 1/B5/4274:4280, 1/B5/4298:4303 | No text annotation | ||
| J5_9QQA_009 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3974, 1/B5/4121:4127 | No text annotation | ||
| J6_9QQA_001 | 1/B5/21:26, 1/B5/57:67, 1/B5/74:78, 1/B5/105:109, 1/B5/332:339, 1/B8/33:35 | No text annotation | ||
| J6_9QQA_002 | 1/B5/1296:1299, 1/B5/1328:1332, 1/B5/1339:1343, 1/B5/1373:1376, 1/B5/1419:1421, 1/B5/1454:1459 | No text annotation | ||
| J6_9QQA_003 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3976, 1/B5/4077:4088, 1/B5/4116:4127 | No text annotation | ||
| J7_9QQA_001 | 1/B5/1621:1626, 1/B5/1639:1640, 1/B5/1791:1794, 1/B5/1818:1823, 1/B5/1834:1838, 1/B5/2016:2017, 1/B5/2121:2126 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9QQA_024 | No text annotation |
Coloring options: