HL_9QQA_023

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_023 not in the Motif Atlas

Geometric match to HL_8ITS_002

Geometric discrepancy: 0.117

The information below is about HL_8ITS_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9QQA|1|A2|U|1179
9QQA|1|A2|G|1180
9QQA|1|A2|C|1181
9QQA|1|A2|A|1182
9QQA|1|A2|A|1183
9QQA|1|A2|A|1184

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain Bp

60S ribosomal protein L37a