HL_9QQA_025

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9QQA|1|A2|U|1301, 9QQA|1|A2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_025 not in the Motif Atlas

Geometric match to HL_8CRE_217

Geometric discrepancy: 0.192

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9QQA|1|A2|A|1296
9QQA|1|A2|U|1297
9QQA|1|A2|U|1298
9QQA|1|A2|G|1299
9QQA|1|A2|A|1300
9QQA|1|A2|U|1301
9QQA|1|A2|A|1302
9QQA|1|A2|G|1303
9QQA|1|A2|C|1304
9QQA|1|A2|U|1305

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ubiquitin-ribosomal protein eS31 fusion protein

Chain AG

Small ribosomal subunit protein uS14

Chain Ao

Small ribosomal subunit protein uS19