HL_9QQA_026

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_026 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0851

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9QQA|1|A2|A|1354
9QQA|1|A2|G|1355
9QQA|1|A2|C|1356
9QQA|1|A2|G|1357
9QQA|1|A2|A|1358
9QQA|1|A2|U|1359

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

Small ribosomal subunit protein uS2

Chain Ab

40S ribosomal protein S2