HL_9QQA_027

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9QQA|1|A2|U|1372

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_027 not in the Motif Atlas

Geometric match to HL_8CRE_219

Geometric discrepancy: 0.1311

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9QQA|1|A2|G|1367
9QQA|1|A2|PSU|1368
9QQA|1|A2|U|1369
9QQA|1|A2|A|1370
9QQA|1|A2|A|1371
9QQA|1|A2|U|1372
9QQA|1|A2|U|1373
9QQA|1|A2|C|1374

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aq

Small ribosomal subunit protein eS17