HL_9QQA_030

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_030 not in the Motif Atlas

Geometric match to HL_3E5C_002

Geometric discrepancy: 0.1349

The information below is about HL_3E5C_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9QQA|1|A2|C|1566
9QQA|1|A2|G|1567
9QQA|1|A2|G|1568
9QQA|1|A2|C|1569
9QQA|1|A2|A|1570
9QQA|1|A2|G|1571

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ar

Small ribosomal subunit protein uS13

Chain As

40S ribosomal protein S19