HL_9QQA_050

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

9QQA|1|B5|A|866, 9QQA|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_050 not in the Motif Atlas

Geometric match to HL_4FEN_001

Geometric discrepancy: 0.3933

The information below is about HL_4FEN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59138.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9QQA|1|B5|C|862
9QQA|1|B5|G|863
9QQA|1|B5|A|864
9QQA|1|B5|G|865
9QQA|1|B5|A|866
9QQA|1|B5|C|867
9QQA|1|B5|C|868
9QQA|1|B5|U|869
9QQA|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30