HL_9QQA_051

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9QQA|1|B5|U|1070, 9QQA|1|B5|C|1071, 9QQA|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_051 not in the Motif Atlas

Geometric match to HL_8SP9_002

Geometric discrepancy: 0.2795

The information below is about HL_8SP9_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

9QQA|1|B5|G|1069
9QQA|1|B5|U|1070
9QQA|1|B5|C|1071
9QQA|1|B5|C|1072
9QQA|1|B5|C|1073
9QQA|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BI

60S ribosomal protein L10