HL_9QQA_052

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9QQA|1|B5|C|1269

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_052 not in the Motif Atlas

Geometric match to HL_8CRE_013

Geometric discrepancy: 0.1121

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9QQA|1|B5|U|1261
9QQA|1|B5|C|1262
9QQA|1|B5|U|1263
9QQA|1|B5|U|1264
9QQA|1|B5|G|1265
9QQA|1|B5|1MA|1266
9QQA|1|B5|A|1267
9QQA|1|B5|A|1268
9QQA|1|B5|C|1269
9QQA|1|B5|A2M|1270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32