HL_9QQA_057

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_057 not in the Motif Atlas

Geometric match to HL_1Q96_001

Geometric discrepancy: 0.0913

The information below is about HL_1Q96_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9QQA|1|B5|G|1516
9QQA|1|B5|G|1517
9QQA|1|B5|A|1518
9QQA|1|B5|A|1519
9QQA|1|B5|A|1520
9QQA|1|B5|C|1521

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ak

Small ribosomal subunit protein uS17

Chain Am

Small ribosomal subunit protein uS15

Chain Bp

60S ribosomal protein L37a