HL_9QQA_070

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9QQA|1|B5|G|2264, 9QQA|1|B5|U|2268

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_070 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1652

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9QQA|1|B5|A|2263
9QQA|1|B5|G|2264
9QQA|1|B5|OMC|2265
9QQA|1|B5|A|2266
9QQA|1|B5|OMG|2267
9QQA|1|B5|U|2268
9QQA|1|B5|U|2269

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

Large ribosomal subunit protein uL22

Chain BR

Ribosomal protein L19

Chain Bl

60S ribosomal protein L39-like