HL_9QQA_076

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_076 not in the Motif Atlas

Geometric match to HL_8P9A_147

Geometric discrepancy: 0.0978

The information below is about HL_8P9A_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9QQA|1|B5|G|2421
9QQA|1|B5|G|2422
9QQA|1|B5|U|2423
9QQA|1|B5|A|2424
9QQA|1|B5|A|2425
9QQA|1|B5|C|2426

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34