HL_9QQA_077

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9QQA|1|B5|U|2474

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_077 not in the Motif Atlas

Geometric match to HL_8P9A_148

Geometric discrepancy: 0.1761

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9QQA|1|B5|G|2467
9QQA|1|B5|U|2468
9QQA|1|B5|U|2469
9QQA|1|B5|C|2470
9QQA|1|B5|U|2471
9QQA|1|B5|C|2472
9QQA|1|B5|U|2473
9QQA|1|B5|U|2474
9QQA|1|B5|PSU|2475

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BU

60S ribosomal protein L22

Chain Nu

Isoform 2 of Transcription factor BTF3