HL_9QQA_094

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_094 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.1483

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9QQA|1|B5|G|3996
9QQA|1|B5|A|3997
9QQA|1|B5|C|3998
9QQA|1|B5|A|3999
9QQA|1|B5|G|4000
9QQA|1|B5|A|4001
9QQA|1|B5|A|4002
9QQA|1|B5|A|4003
9QQA|1|B5|C|4004

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BJ

60S ribosomal protein L11