HL_9QQA_105

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9QQA|1|B5|G|4440, 9QQA|1|B5|C|4444

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_105 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.1035

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9QQA|1|B5|C|4434
9QQA|1|B5|PSU|4435
9QQA|1|B5|G|4436
9QQA|1|B5|A|4437
9QQA|1|B5|A|4438
9QQA|1|B5|C|4439
9QQA|1|B5|G|4440
9QQA|1|B5|C|4441
9QQA|1|B5|C|4442
9QQA|1|B5|U|4443
9QQA|1|B5|C|4444
9QQA|1|B5|U|4445
9QQA|1|B5|A|4446
9QQA|1|B5|A|4447
9QQA|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Large ribosomal subunit protein uL13

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein