HL_9QQA_108

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9QQA|1|B5|C|4763, 9QQA|1|B5|C|4764, 9QQA|1|B5|U|4765, 9QQA|1|B5|C|4766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_108 not in the Motif Atlas

Homologous match to HL_9PN5_069

Geometric discrepancy: 0.5999

The information below is about HL_9PN5_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.6

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

9QQA|1|B5|C|4760
9QQA|1|B5|U|4761
9QQA|1|B5|C|4762
9QQA|1|B5|C|4763
9QQA|1|B5|C|4764
9QQA|1|B5|U|4765
9QQA|1|B5|C|4766
9QQA|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8