HL_9QQB_003

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9QQB|1|A2|U|160, 9QQB|1|A2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_003 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.1379

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QQB|1|A2|G|156
9QQB|1|A2|U|157
9QQB|1|A2|A|158
9QQB|1|A2|A2M|159
9QQB|1|A2|U|160
9QQB|1|A2|U|161
9QQB|1|A2|C|162

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24