Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9QQB_0011/A2/7:17No text annotation
geometric
HL_8CRE_191
HL_89881.5
HL_9QQB_0021/A2/69:80No text annotation
HL_9QQB_0031/A2/156:162No text annotation
geometric
HL_8CRE_193
HL_37824.8
HL_9QQB_0041/A2/197:202GNRA
geometric
HL_3RG5_007
HL_37824.8
HL_9QQB_0051/A2/289:296No text annotation
geometric
HL_8CRE_196
HL_77436.5
HL_9QQB_0061/A2/323:330No text annotation
HL_9QQB_0071/A2/378:388No text annotation
HL_9QQB_0081/A2/417:422No text annotation
geometric
HL_8CRE_199
HL_37824.8
HL_9QQB_0091/A2/442:453No text annotation
geometric
HL_8CRE_200
HL_06226.4
HL_9QQB_0101/A2/463:468UNCG
geometric
HL_8P9A_200
HL_34617.5
HL_9QQB_0111/A2/499:505No text annotation
geometric
HL_8P9A_207
HL_48417.6
HL_9QQB_0121/A2/540:545No text annotation
HL_9QQB_0131/A2/570:582No text annotation
geometric
HL_8P9A_203
HL_05304.3
HL_9QQB_0141/A2/619:624No text annotation
geometric
HL_8CRE_205
HL_93535.1
HL_9QQB_0151/A2/821:829No text annotation
geometric
HL_8CRE_207
HL_85367.2
HL_9QQB_0161/A2/835:839No text annotation
geometric
HL_8CRE_052
HL_75660.5
HL_9QQB_0171/A2/886:902No text annotation
HL_9QQB_0181/A2/958:967No text annotation
geometric
HL_8CRE_210
HL_75293.5
HL_9QQB_0191/A2/995:1000No text annotation
geometric
HL_8CRE_211
HL_37824.8
HL_9QQB_0201/A2/1055:1065No text annotation
geometric
HL_4LFB_017
HL_75293.5
HL_9QQB_0211/A2/1115:1120No text annotation
HL_9QQB_0221/A2/1142:1147No text annotation
geometric
HL_8CRE_214
HL_37824.8
HL_9QQB_0231/A2/1179:1184GNRA
geometric
HL_4LFB_020
HL_37824.8
HL_9QQB_0241/A2/1246:1255No text annotation
geometric
HL_8CRE_216
HL_50779.4
HL_9QQB_0251/A2/1296:1305No text annotation
geometric
HL_8CRE_217
HL_81538.2
HL_9QQB_0261/A2/1354:1359GNRA
geometric
HL_8P9A_217
HL_37824.8
HL_9QQB_0271/A2/1367:1374No text annotation
geometric
HL_8CRE_219
HL_77436.5
HL_9QQB_0281/A2/1418:1423No text annotation
geometric
HL_2PJP_001
HL_56131.2
HL_9QQB_0291/A2/1461:1467No text annotation
geometric
HL_8CRE_221
HL_37369.2
HL_9QQB_0301/A2/1566:1571GNRA
geometric
HL_3E5C_002
HL_37824.8
HL_9QQB_0311/A2/1615:1626No text annotation
geometric
HL_8CRE_223
HL_67079.1
HL_9QQB_0321/A2/1659:1667No text annotation
geometric
HL_8CRE_224
HL_01609.3
HL_9QQB_0331/A2/1764:1770No text annotation
HL_9QQB_0341/A2/1848:1853GNRA
geometric
HL_5J7L_031
HL_37824.8
HL_9QQB_0351/AT/12:23No text annotation
HL_9QQB_0361/AT/31:39tRNA anticodon loop
geometric
HL_4TUE_034
HL_06059.7
HL_9QQB_0371/AT/53:61T-loop with 2 stacked bulged bases
geometric
HL_5AXM_003
HL_28252.9
HL_9QQB_0381/B5/37:44No text annotation
geometric
HL_8P9A_113
HL_30068.2
HL_9QQB_0391/B5/68:73No text annotation
geometric
HL_8CRE_002
HL_53890.2
HL_9QQB_0401/B5/89:95No text annotation
geometric
HL_4WF9_008
HL_37369.2
HL_9QQB_0411/B5/131:137No text annotation
geometric
HL_7VTI_001
HL_48417.6
HL_9QQB_0421/B5/204:211T-loop with 2 bulged bases not stacked
geometric
HL_3VJR_001
HL_01609.3
HL_9QQB_0431/B5/222:226No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_9QQB_0441/B5/230:238No text annotation
HL_9QQB_0451/B5/289:298No text annotation
geometric
HL_8CRE_219
HL_77436.5
HL_9QQB_0461/B5/314:323No text annotation
geometric
HL_8CRE_009
HL_77600.2
HL_9QQB_0471/B5/368:373No text annotation
geometric
HL_8CRE_029
HL_37824.8
HL_9QQB_0481/B5/393:398GNRA
geometric
HL_5F9F_003
HL_37824.8
HL_9QQB_0491/B5/773:778UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_9QQB_0501/B5/862:870No text annotation
HL_9QQB_0511/B5/1069:1074Mini UNCG
geometric
HL_6AAX_001
HL_56334.1
HL_9QQB_0521/B5/1261:1270No text annotation
geometric
HL_8CRE_013
HL_28252.9
HL_9QQB_0531/B5/1308:1317No text annotation
HL_9QQB_0541/B5/1333:1338No text annotation
geometric
HL_8CRE_015
HL_37824.8
HL_9QQB_0551/B5/1392:1403No text annotation
HL_9QQB_0561/B5/1435:1439Mini UNCG
geometric
HL_8XZL_001
HL_43517.1
HL_9QQB_0571/B5/1516:1521GNRA
geometric
HL_5J7L_003
HL_37824.8
HL_9QQB_0581/B5/1548:1557No text annotation
geometric
HL_8CRE_019
HL_88205.2
HL_9QQB_0591/B5/1582:1590No text annotation
geometric
HL_8P9A_133
HL_87553.1
HL_9QQB_0601/B5/1630:1635No text annotation
geometric
HL_8CRE_021
HL_70782.2
HL_9QQB_0611/B5/1702:1708No text annotation
geometric
HL_4WSM_210
HL_59735.5
HL_9QQB_0621/B5/1755:1762No text annotation
HL_9QQB_0631/B5/1803:1809No text annotation
geometric
HL_8CRE_024
HL_37824.8
HL_9QQB_0641/B5/1825:1832No text annotation
geometric
HL_8CRE_025
HL_42998.2
HL_9QQB_0651/B5/1917:1927No text annotation
geometric
HL_8CRE_026
HL_19210.3
HL_9QQB_0661/B5/1945:1952GNRA wlth tandem sheared
geometric
HL_5J7L_154
HL_81538.2
HL_9QQB_0671/B5/2100:2104No text annotation
HL_9QQB_0681/B5/2160:2165No text annotation
geometric
HL_8CRE_029
HL_37824.8
HL_9QQB_0691/B5/2219:2227No text annotation
geometric
HL_8CRE_030
HL_28252.9
HL_9QQB_0701/B5/2263:2269No text annotation
geometric
HL_9DFE_036
HL_57176.2
HL_9QQB_0711/B5/2301:2306No text annotation
geometric
HL_8CRE_032
HL_37824.8
HL_9QQB_0721/B5/2312:2314No text annotation
HL_9QQB_0731/B5/2330:2334No text annotation
HL_9QQB_0741/B5/2366:2375No text annotation
geometric
HL_8CRE_034
HL_81545.2
HL_9QQB_0751/B5/2404:2409GNRA
geometric
HL_5F9F_003
HL_37824.8
HL_9QQB_0761/B5/2421:2426No text annotation
geometric
HL_8CRE_035
HL_37824.8
HL_9QQB_0771/B5/2467:2475No text annotation
geometric
HL_8CRE_036
HL_77082.1
HL_9QQB_0781/B5/2507:2513Other HL
geometric
HL_4V9F_039
HL_77436.5
HL_9QQB_0791/B5/2547:2555No text annotation
HL_9QQB_0801/B5/2635:2642No text annotation
geometric
HL_8CRE_040
HL_89567.2
HL_9QQB_0811/B5/2653:2659GNRA
geometric
HL_8P9A_153
HL_37824.8
HL_9QQB_0821/B5/2715:2720UNCG
geometric
HL_8P9A_154
HL_34617.5
HL_9QQB_0831/B5/3346:3350No text annotation
HL_9QQB_0841/B5/3371:3381No text annotation
geometric
HL_8CRE_044
HL_01962.2
HL_9QQB_0851/B5/3400:3406GNRA variation
geometric
HL_4QK9_001
HL_37824.8
HL_9QQB_0861/B5/3456:3461GNRA
geometric
HL_3SUX_002
HL_37824.8
HL_9QQB_0871/B5/3489:3499No text annotation
geometric
HL_8CRE_047
HL_25847.2
HL_9QQB_0881/B5/3528:3536No text annotation
geometric
HL_8CRE_048
HL_20167.2
HL_9QQB_0891/B5/3605:3614No text annotation
geometric
HL_8CRE_049
HL_61996.3
HL_9QQB_0901/B5/3831:3834No text annotation
HL_9QQB_0911/B5/3939:3947No text annotation
geometric
HL_4V9F_055
HL_85367.2
HL_9QQB_0921/B5/3956:3968No text annotation
geometric
HL_4WF9_050
HL_91939.2
HL_9QQB_0931/B5/3996:4004No text annotation
geometric
HL_4V9F_057
HL_50860.2
HL_9QQB_0941/B5/4016:4023No text annotation
geometric
HL_8CRE_056
HL_93324.4
HL_9QQB_0951/B5/4047:4055No text annotation
geometric
HL_8CRE_057
HL_80599.2
HL_9QQB_0961/B5/4067:4072GNRA
geometric
HL_8P9A_170
HL_37824.8
HL_9QQB_0971/B5/4098:4108No text annotation
geometric
HL_7JRT_001
HL_67407.5
HL_9QQB_0981/B5/4163:4171No text annotation
geometric
HL_8P9A_172
HL_32735.2
HL_9QQB_0991/B5/4220:4227No text annotation
geometric
HL_8P9A_173
HL_31585.4
HL_9QQB_1001/B5/4241:4251No text annotation
HL_9QQB_1011/B5/4286:4291GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_9QQB_1021/B5/4349:4354GNRA
geometric
HL_8ITS_002
HL_37824.8
HL_9QQB_1031/B5/4392:4397No text annotation
geometric
HL_8CRE_065
HL_65794.5
HL_9QQB_1041/B5/4434:4448No text annotation
geometric
HL_8CRE_066
HL_74055.2
HL_9QQB_1051/B5/4645:4654No text annotation
HL_9QQB_1061/B5/4714:4722No text annotation
geometric
HL_8CRE_069
HL_64690.6
HL_9QQB_1071/B5/4760:4767No text annotation
geometric
HL_5J7L_149
HL_09452.1
HL_9QQB_1081/B7/32:45No text annotation
geometric
HL_8OI5_068
HL_13971.1
HL_9QQB_1091/B7/36:41No text annotation
geometric
HL_8OI5_069
HL_47787.2
HL_9QQB_1101/B7/86:91GNRA
geometric
HL_9DXL_001
HL_37824.8
HL_9QQB_1111/B8/47:56No text annotation
geometric
HL_8CRE_074
HL_93438.2
HL_9QQB_1121/B8/68:90No text annotation
HL_9QQB_1131/B8/107:112No text annotation
geometric
HL_8CRE_076
HL_53890.2
HL_9QQB_1141/B8/122:128No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9QQB_0011/A2/23:25,
1/A2/650:652
Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_9QQB_0021/A2/34:36,
1/A2/520:522
Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_87907.2
IL_9QQB_0031/A2/37:40,
1/A2/515:519
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_9QQB_0041/A2/41:47,
1/A2/480:482
No text annotation
geometric
IL_8P9A_376
IL_88082.1
IL_9QQB_0051/A2/49:51,
1/A2/477:478
Minor groove platform
geometric
IL_8P9A_377
IL_51454.3
IL_9QQB_0061/A2/57:62,
1/A2/86:88
No text annotation
geometric
IL_8P9A_378
IL_61299.4
IL_9QQB_0071/A2/63:68,
1/A2/81:85
No text annotation
geometric
IL_8P9A_379
IL_21667.1
IL_9QQB_0081/A2/108:110,
1/A2/352:354
Isolated non-canonical cWW pair
geometric
IL_8FEQ_001
IL_28037.2
IL_9QQB_0091/A2/110:115,
1/A2/349:352
Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_9QQB_0101/A2/116:121,
1/A2/344:348
No text annotation
geometric
IL_8CRE_399
IL_29223.1
IL_9QQB_0111/A2/145:151,
1/A2/167:174
No text annotation
geometric
IL_8CRE_400
IL_80604.6
IL_9QQB_0121/A2/152:154,
1/A2/164:166
Isolated cWH basepair
geometric
IL_6RA4_002
IL_10167.6
IL_9QQB_0131/A2/188:192,
1/A2/207:211
Triple sheared
geometric
IL_1U6B_002
IL_17948.2
IL_9QQB_0141/A2/216:219,
1/A2/303:310
No text annotation
IL_9QQB_0151/A2/313:315,
1/A2/337:338
Single bulged A
geometric
IL_8P9A_388
IL_31462.7
IL_9QQB_0161/A2/318:320,
1/A2/333:334
No text annotation
geometric
IL_8OI5_137
IL_90729.1
IL_9QQB_0171/A2/360:365,
1/A2/397:404
Kink-turn with non-sequential stacking
geometric
IL_8CRE_408
IL_46174.3
IL_9QQB_0181/A2/367:372,
1/A2/394:395
No text annotation
geometric
IL_8CRE_409
IL_99380.1
IL_9QQB_0191/A2/412:414,
1/A2/425:430
No text annotation
geometric
IL_8CRE_410
IL_73789.1
IL_9QQB_0201/A2/438:440,
1/A2/455:457
No text annotation
geometric
IL_8CRE_411
IL_10167.6
IL_9QQB_0211/A2/460:462,
1/A2/469:471
No text annotation
geometric
IL_8CRE_412
IL_42997.3
IL_9QQB_0221/A2/488:490,
1/A2/512:513
Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_9QQB_0231/A2/492:497,
1/A2/507:510
No text annotation
IL_9QQB_0241/A2/530:531,
1/A2/555:557
Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_9QQB_0251/A2/536:538,
1/A2/547:550
No text annotation
IL_9QQB_0261/A2/564:566,
1/A2/586:593
No text annotation
geometric
IL_8CRE_418
IL_86136.1
IL_9QQB_0271/A2/567:570,
1/A2/582:585
Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_9QQB_0281/A2/600:607,
1/A2/637:638
SSU/LSU pseudoknot
geometric
IL_8P9A_402
IL_41203.4
IL_9QQB_0291/A2/607:609,
1/A2/636:637
No text annotation
geometric
IL_8CRE_422
IL_89505.4
IL_9QQB_0301/A2/612:618,
1/A2/625:633
No text annotation
geometric
IL_8P9A_404
IL_54177.4
IL_9QQB_0311/A2/664:666,
1/A2/1163:1165
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_9QQB_0321/A2/666:672,
1/A2/1162:1163
No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_9QQB_0331/A2/674:676,
1/A2/1031:1033
Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_87907.2
IL_9QQB_0341/A2/677:681,
1/A2/1026:1030
No text annotation
geometric
IL_8CRE_426
IL_17136.7
IL_9QQB_0351/A2/693:696,
1/A2/732:735
Tandem non-canonical cWW pairs
geometric
IL_1D4R_003
IL_85033.2
IL_9QQB_0361/A2/746:755,
1/A2/791:797
No text annotation
IL_9QQB_0371/A2/803:804,
1/A2/861:864
No text annotation
geometric
IL_8CRE_428
IL_68140.4
IL_9QQB_0381/A2/806:808,
1/A2/857:859
Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_87907.2
IL_9QQB_0391/A2/808:816,
1/A2/850:857
No text annotation
IL_9QQB_0401/A2/834:835,
1/A2/839:842
Multiple bulged bases
geometric
IL_4V9F_088
IL_42626.2
IL_9QQB_0411/A2/875:877,
1/A2/911:913
Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_87907.2
IL_9QQB_0421/A2/878:880,
1/A2/908:910
Isolated non-canonical cWW pair
geometric
IL_4LFB_006
IL_87907.2
IL_9QQB_0431/A2/923:924,
1/A2/1020:1023
Major groove platform; stack outside cWW
geometric
IL_8P9A_417
IL_50694.7
IL_9QQB_0441/A2/926:927,
1/A2/1016:1018
Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_9QQB_0451/A2/929:932,
1/A2/1011:1014
No text annotation
geometric
IL_8P9A_419
IL_85033.2
IL_9QQB_0461/A2/932:936,
1/A2/1008:1011
No text annotation
geometric
IL_8CRE_434
IL_85033.2
IL_9QQB_0471/A2/943:946,
1/A2/982:985
No text annotation
geometric
IL_8P9A_421
IL_85033.2
IL_9QQB_0481/A2/953:957,
1/A2/968:975
Kink-turn
geometric
IL_6UFM_001
IL_01488.3
IL_9QQB_0491/A2/1043:1048,
1/A2/1072:1074
No text annotation
geometric
IL_8CRE_437
IL_97273.1
IL_9QQB_0501/A2/1048:1052,
1/A2/1068:1072
No text annotation
geometric
IL_8CRE_438
IL_17136.7
IL_9QQB_0511/A2/1092:1094,
1/A2/1153:1159
No text annotation
geometric
IL_8CRE_439
IL_82706.1
IL_9QQB_0521/A2/1099:1104,
1/A2/1130:1135
Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.1
IL_9QQB_0531/A2/1109:1111,
1/A2/1124:1125
Minor groove platform
geometric
IL_8P9A_401
IL_51454.3
IL_9QQB_0541/A2/1169:1176,
1/A2/1187:1192
8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_8CRE_442
IL_41756.4
IL_9QQB_0551/A2/1204:1205,
1/A2/1695:1697
Single bulged A
geometric
IL_5J7L_039
IL_31462.7
IL_9QQB_0561/A2/1207:1209,
1/A2/1692:1693
Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_9QQB_0571/A2/1215:1218,
1/A2/1682:1686
C-loop
geometric
IL_8CRE_445
IL_63596.11
IL_9QQB_0581/A2/1231:1233,
1/A2/1527:1529
Isolated non-canonical cWW pair
geometric
IL_8P9A_432
IL_87907.2
IL_9QQB_0591/A2/1236:1237,
1/A2/1522:1524
Minor groove platform
geometric
IL_8P9A_433
IL_51454.3
IL_9QQB_0601/A2/1271:1273,
1/A2/1511:1513
Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_87907.2
IL_9QQB_0611/A2/1282:1288,
1/A2/1315:1317
No text annotation
IL_9QQB_0621/A2/1282:1291,
1/A2/1310:1317
No text annotation
IL_9QQB_0631/A2/1288:1291,
1/A2/1310:1315
No text annotation
IL_9QQB_0641/A2/1291:1294,
1/A2/1307:1310
Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_9QQB_0651/A2/1326:1328,
1/A2/1503:1504
No text annotation
geometric
IL_8CRE_451
IL_89505.4
IL_9QQB_0661/A2/1330:1334,
1/A2/1499:1501
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_9QQB_0671/A2/1330:1336,
1/A2/1493:1501
No text annotation
geometric
IL_8P9A_439
IL_86012.1
IL_9QQB_0681/A2/1334:1336,
1/A2/1493:1499
No text annotation
geometric
IL_8P9A_440
IL_49061.1
IL_9QQB_0691/A2/1338:1339,
1/A2/1489:1491
Single bulged A
geometric
IL_8CRE_455
IL_31462.7
IL_9QQB_0701/A2/1348:1350,
1/A2/1381:1383
Isolated cWH basepair
geometric
IL_8P9A_442
IL_10167.6
IL_9QQB_0711/A2/1364:1366,
1/A2/1375:1376
No text annotation
geometric
IL_8CRE_457
IL_51454.3
IL_9QQB_0721/A2/1396:1400,
1/A2/1448:1451
Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_9QQB_0731/A2/1403:1406,
1/A2/1442:1445
No text annotation
geometric
IL_8P9A_445
IL_78800.1
IL_9QQB_0741/A2/1409:1410,
1/A2/1433:1439
No text annotation
IL_9QQB_0751/A2/1413:1414,
1/A2/1428:1430
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_9QQB_0761/A2/1417:1418,
1/A2/1423:1425
No text annotation
IL_9QQB_0771/A2/1538:1540,
1/A2/1595:1597
Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_87907.2
IL_9QQB_0781/A2/1542:1551,
1/A2/1583:1593
No text annotation
IL_9QQB_0791/A2/1551:1559,
1/A2/1578:1583
No text annotation
IL_9QQB_0801/A2/1561:1563,
1/A2/1574:1576
Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_9QQB_0811/A2/1605:1611,
1/A2/1630:1636
No text annotation
IL_9QQB_0821/A2/1701:1703,
1/A2/1834:1837
No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_9QQB_0831/A2/1703:1706,
1/A2/1830:1834
No text annotation
geometric
IL_5J7L_059
IL_65718.4
IL_9QQB_0841/A2/1707:1709,
1/A2/1827:1829
Isolated non-canonical cWW pair
geometric
IL_5J7L_363
IL_87907.2
IL_9QQB_0851/A2/1709:1712,
1/A2/1823:1827
No text annotation
geometric
IL_8CRE_401
IL_51479.1
IL_9QQB_0861/A2/1715:1717,
1/A2/1818:1820
Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_87907.2
IL_9QQB_0871/A2/1718:1721,
1/A2/1814:1817
Double sheared
geometric
IL_8P9A_457
IL_09705.15
IL_9QQB_0881/A2/1721:1723,
1/A2/1813:1814
No text annotation
geometric
IL_8CRE_472
IL_89505.4
IL_9QQB_0891/A2/1730:1732,
1/A2/1804:1806
No text annotation
geometric
IL_8CRE_473
IL_07785.1
IL_9QQB_0901/A2/1734:1737,
1/A2/1799:1802
Double sheared
geometric
IL_8CRE_474
IL_09705.15
IL_9QQB_0911/A2/1740:1742,
1/A2/1794:1796
Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_87907.2
IL_9QQB_0921/A2/1743:1747,
1/A2/1789:1793
Triple sheared
geometric
IL_9DFE_075
IL_50730.2
IL_9QQB_0931/A2/1751:1752,
1/A2/1783:1785
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_9QQB_0941/A2/1752:1754,
1/A2/1780:1783
No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_9QQB_0951/B5/6:7,
1/B8/149:151
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9QQB_0961/B5/12:14,
1/B8/143:144
No text annotation
geometric
IL_8CRE_003
IL_89505.4
IL_9QQB_0971/B5/16:18,
1/B8/139:141
Isolated non-canonical cWW pair
geometric
IL_7ECN_001
IL_87907.2
IL_9QQB_0981/B5/26:27,
1/B5/55:57
No text annotation
geometric
IL_8CRE_004
IL_90729.1
IL_9QQB_0991/B5/30:37,
1/B5/44:52
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_9QQB_1001/B5/81:88,
1/B5/96:102
8x7 Sarcin-Ricin; G-bulge
geometric
IL_1JBR_001
IL_04346.10
IL_9QQB_1011/B5/118:121,
1/B5/152:153
No text annotation
geometric
IL_6XJQ_007
IL_56987.1
IL_9QQB_1021/B5/118:122,
1/B5/147:153
No text annotation
IL_9QQB_1031/B5/121:122,
1/B5/147:152
No text annotation
geometric
IL_4V9F_009
IL_92634.2
IL_9QQB_1041/B5/125:126,
1/B5/142:144
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9QQB_1051/B5/168:173,
1/B5/263:267
No text annotation
IL_9QQB_1061/B5/180:182,
1/B5/255:256
Single stack bend with bulge
geometric
IL_8P9A_328
IL_90729.1
IL_9QQB_1071/B5/184:189,
1/B5/252:253
No text annotation
IL_9QQB_1081/B5/195:196,
1/B5/244:246
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9QQB_1091/B5/199:201,
1/B5/214:215
No text annotation
geometric
IL_8CRE_013
IL_89505.4
IL_9QQB_1101/B5/339:342,
1/B8/32:33
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_9QQB_1111/B5/348:350,
1/B8/25:26
Single bulged A
geometric
IL_8CRE_014
IL_31462.7
IL_9QQB_1121/B5/387:390,
1/B5/401:414
No text annotation
geometric
IL_8CRE_015
IL_81516.2
IL_9QQB_1131/B5/415:421,
1/B8/13:19
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_9QQB_1141/B5/443:446,
1/B5/1244:1248
No text annotation
IL_9QQB_1151/B5/448:450,
1/B5/1241:1242
Single bulged C
geometric
IL_4C7O_003
IL_61258.15
IL_9QQB_1161/B5/459:460,
1/B5/689:691
Single bulged C
geometric
IL_1S03_002
IL_61258.15
IL_9QQB_1171/B5/462:464,
1/B5/685:687
Isolated non-canonical cWW pair
geometric
IL_8P9A_270
IL_87907.2
IL_9QQB_1181/B5/466:472,
1/B5/676:683
No text annotation
IL_9QQB_1191/B5/481:483,
1/B5/666:667
Single bulged U
geometric
IL_2R8S_004
IL_89505.4
IL_9QQB_1201/B5/483:486,
1/B5/665:666
Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_9QQB_1211/B5/488:489,
1/B5/659:663
Multiple bulged bases
geometric
IL_1R3E_002
IL_84476.1
IL_9QQB_1221/B5/492:494,
1/B5/655:656
Single bulged U
geometric
IL_8TQX_002
IL_89505.4
IL_9QQB_1231/B5/498:500,
1/B5/650:651
No text annotation
IL_9QQB_1241/B5/501:506,
1/B5/648:649
Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_9QQB_1251/B5/510:512,
1/B5/643:644
Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_9QQB_1261/B5/514:517,
1/B5/640:641
Major groove intercalation
geometric
IL_5J7L_315
IL_82107.5
IL_9QQB_1271/B5/522:523,
1/B5/632:635
No text annotation
IL_9QQB_1281/B5/703:704,
1/B5/1230:1232
Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_9QQB_1291/B5/717:718,
1/B5/842:845
Multiple bulged bases
geometric
IL_7Q80_003
IL_84476.1
IL_9QQB_1301/B5/721:725,
1/B5/838:839
No text annotation
IL_9QQB_1311/B5/726:729,
1/B5/827:837
No text annotation
IL_9QQB_1321/B5/731:734,
1/B5/822:825
No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_9QQB_1331/B5/740:747,
1/B5/808:816
No text annotation
geometric
IL_8CRE_022
IL_43858.1
IL_9QQB_1341/B5/756:761,
1/B5/790:799
No text annotation
IL_9QQB_1351/B5/988:989,
1/B5/1123:1125
Single bulged A
geometric
IL_9C75_002
IL_31462.7
IL_9QQB_1361/B5/997:999,
1/B5/1104:1108
Isolated near basepair
geometric
IL_7A0S_030
IL_42997.3
IL_9QQB_1371/B5/1001:1002,
1/B5/1100:1102
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_9QQB_1381/B5/1007:1009,
1/B5/1093:1095
Isolated non-canonical cWW pair
geometric
IL_5C5W_002
IL_87907.2
IL_9QQB_1391/B5/1011:1012,
1/B5/1089:1091
Single bulged U
geometric
IL_8P9A_427
IL_89505.4
IL_9QQB_1401/B5/1064:1066,
1/B5/1077:1079
Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_9QQB_1411/B5/1131:1133,
1/B5/1207:1208
No text annotation
IL_9QQB_1421/B5/1301:1304,
1/B5/1323:1326
No text annotation
IL_9QQB_1431/B5/1301:1305,
1/B5/1320:1326
No text annotation
IL_9QQB_1441/B5/1304:1305,
1/B5/1320:1323
Single bulged A
geometric
IL_4V9F_090
IL_42771.1
IL_9QQB_1451/B5/1380:1384,
1/B5/1410:1415
No text annotation
geometric
IL_1M5K_001
IL_80926.1
IL_9QQB_1461/B5/1386:1389,
1/B5/1405:1408
Double sheared
geometric
IL_9BZC_001
IL_09705.15
IL_9QQB_1471/B5/1390:1392,
1/B5/1403:1404
Single bulged C
geometric
IL_6XKO_001
IL_61258.15
IL_9QQB_1481/B5/1422:1423,
1/B5/1451:1453
Single bulged A
geometric
IL_8P9A_252
IL_31462.7
IL_9QQB_1491/B5/1429:1431,
1/B5/1444:1445
Single stack bend
geometric
IL_8P9A_238
IL_90729.1
IL_9QQB_1501/B5/1434:1435,
1/B5/1439:1441
No text annotation
IL_9QQB_1511/B5/1475:1477,
1/B5/1610:1612
Isolated non-canonical cWW pair
geometric
IL_8P9A_255
IL_87907.2
IL_9QQB_1521/B5/1477:1481,
1/B5/1603:1610
No text annotation
geometric
IL_8P9A_256
IL_54041.2
IL_9QQB_1531/B5/1500:1501,
1/B5/1567:1569
Single bulged A
geometric
IL_8CRE_031
IL_31462.7
IL_9QQB_1541/B5/1505:1506,
1/B5/1531:1533
Single bulged G
geometric
IL_4V9F_026
IL_00225.14
IL_9QQB_1551/B5/1506:1510,
1/B5/1527:1531
Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_9QQB_1561/B5/1541:1544,
1/B5/1560:1562
No text annotation
geometric
IL_8CRE_034
IL_51387.3
IL_9QQB_1571/B5/1545:1547,
1/B5/1558:1559
Single bulged U
geometric
IL_8P9A_260
IL_89505.4
IL_9QQB_1581/B5/1579:1581,
1/B5/1591:1595
No text annotation
geometric
IL_8CRE_036
IL_06549.2
IL_9QQB_1591/B5/1626:1628,
1/B5/1637:1639
Isolated non-canonical cWW pair
geometric
IL_8CRE_037
IL_28037.2
IL_9QQB_1601/B5/1641:1643,
1/B5/1787:1790
No text annotation
IL_9QQB_1611/B5/1649:1660,
1/B5/1780:1781
No text annotation
IL_9QQB_1621/B5/1662:1664,
1/B5/1777:1778
No text annotation
geometric
IL_8CRE_040
IL_00225.14
IL_9QQB_1631/B5/1671:1677,
1/B5/1729:1736
No text annotation
IL_9QQB_1641/B5/1678:1683,
1/B5/1725:1728
No text annotation
geometric
IL_8CRE_043
IL_26222.2
IL_9QQB_1651/B5/1685:1688,
1/B5/1720:1723
No text annotation
geometric
IL_8CRE_044
IL_77658.1
IL_9QQB_1661/B5/1688:1690,
1/B5/1718:1720
Isolated non-canonical cWW pair
geometric
IL_8P9A_354
IL_87907.2
IL_9QQB_1671/B5/1692:1695,
1/B5/1715:1716
Major groove minor groove platform; mini C-loop
geometric
IL_4LFB_025
IL_68140.4
IL_9QQB_1681/B5/1699:1702,
1/B5/1708:1711
Tandem non-canonical cWW pairs
geometric
IL_1D4R_003
IL_85033.2
IL_9QQB_1691/B5/1753:1755,
1/B5/1762:1763
No text annotation
geometric
IL_8CRE_048
IL_00225.14
IL_9QQB_1701/B5/1797:1799,
1/B5/1813:1815
Isolated non-canonical cWW pair
geometric
IL_8P9A_274
IL_87907.2
IL_9QQB_1721/B5/1844:1848,
1/B5/2006:2010
UAA/GAN
geometric
IL_8P9A_276
IL_38507.2
IL_9QQB_1731/B5/1850:1859,
1/B5/2002:2004
No text annotation
IL_9QQB_1741/B5/1859:1861,
1/B5/2001:2002
No text annotation
IL_9QQB_1751/B5/1865:1872,
1/B5/1992:1997
No text annotation
geometric
IL_8CRE_054
IL_77278.1
IL_9QQB_1761/B5/1872:1883,
1/B5/1977:1992
No text annotation
geometric
IL_8P9A_280
IL_83149.1
IL_9QQB_1771/B5/1885:1887,
1/B5/1974:1975
Single bulged U
geometric
IL_8P9A_281
IL_89505.4
IL_9QQB_1781/B5/1896:1904,
1/B5/1961:1965
Kink-turn
geometric
IL_4V9F_042
IL_99692.2
IL_9QQB_1791/B5/1912:1916,
1/B5/1928:1932
No text annotation
geometric
IL_8P9A_283
IL_16218.2
IL_9QQB_1801/B5/1940:1944,
1/B5/1953:1955
No text annotation
geometric
IL_8P9A_284
IL_51387.3
IL_9QQB_1811/B5/2022:2024,
1/B5/2115:2116
Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_9QQB_1821/B5/2133:2135,
1/B5/2185:2188
No text annotation
geometric
IL_8P9A_285
IL_42997.3
IL_9QQB_1831/B5/2142:2144,
1/B5/2177:2178
Single bulged A
geometric
IL_3OXE_001
IL_31462.7
IL_9QQB_1841/B5/2145:2152,
1/B5/2172:2176
Kink-turn
geometric
IL_5J7L_288
IL_70923.9
IL_9QQB_1851/B5/2155:2157,
1/B5/2168:2169
Single bulged A
geometric
IL_7DLZ_001
IL_31462.7
IL_9QQB_1861/B5/2201:2207,
1/B5/3590:3595
7x6 Sarcin-Ricin; G-bulge
geometric
IL_8CRE_065
IL_26307.2
IL_9QQB_1871/B5/2249:2252,
1/B5/2626:2627
Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_9QQB_1881/B5/2258:2262,
1/B5/2270:2272
C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_9QQB_1891/B5/2289:2293,
1/B5/2352:2357
UAA/GAN
geometric
IL_8CRE_067
IL_38507.2
IL_9QQB_1901/B5/2320:2322,
1/B5/2342:2343
No text annotation
geometric
IL_8CRE_394
IL_51454.3
IL_9QQB_1911/B5/2385:2390,
1/B5/2615:2617
No text annotation
IL_9QQB_1921/B5/2392:2393,
1/B5/2611:2613
Single bulged U
geometric
IL_2A64_002
IL_89505.4
IL_9QQB_1931/B5/2432:2436,
1/B5/2595:2599
Triple sheared
geometric
IL_9DFE_075
IL_50730.2
IL_9QQB_1941/B5/2441:2445,
1/B5/2580:2590
No text annotation
IL_9QQB_1951/B5/2456:2457,
1/B5/2567:2569
Single bulged A
geometric
IL_3B31_001
IL_31462.7
IL_9QQB_1961/B5/2457:2458,
1/B5/2565:2567
No text annotation
geometric
IL_8CRE_075
IL_90729.1
IL_9QQB_1971/B5/2489:2491,
1/B5/2528:2531
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_9QQB_1981/B5/2494:2496,
1/B5/2524:2525
Single bulged G
geometric
IL_6TFF_002
IL_00225.14
IL_9QQB_1991/B5/2499:2505,
1/B5/2515:2521
No text annotation
geometric
IL_8P9A_301
IL_69543.3
IL_9QQB_2001/B5/2675:2681,
1/B5/3582:3585
No text annotation
geometric
IL_8P9A_302
IL_22829.2
IL_9QQB_2011/B5/2687:2689,
1/B5/3574:3576
No text annotation
geometric
IL_8CRE_080
IL_67095.2
IL_9QQB_2021/B5/2690:2693,
1/B5/3572:3573
Major groove platform; stack outside cWW
geometric
IL_8P9A_304
IL_50694.7
IL_9QQB_2031/B5/2690:2698,
1/B5/3569:3573
No text annotation
geometric
IL_8CRE_082
IL_22854.4
IL_9QQB_2041/B5/2693:2698,
1/B5/3569:3572
No text annotation
geometric
IL_8CRE_083
IL_76758.2
IL_9QQB_2051/B5/2710:2715,
1/B5/2720:2726
No text annotation
geometric
IL_8CRE_084
IL_47346.2
IL_9QQB_2061/B5/2732:2734,
1/B5/3342:3344
Isolated non-canonical cWW pair
geometric
IL_8P9A_308
IL_87907.2
IL_9QQB_2071/B5/2739:2740,
1/B5/3334:3337
No text annotation
geometric
IL_8P9A_309
IL_73355.1
IL_9QQB_2081/B5/3364:3365,
1/B5/3559:3561
Single bulged A
geometric
IL_4V9F_064
IL_31462.7
IL_9QQB_2091/B5/3392:3397,
1/B5/3409:3416
No text annotation
geometric
IL_8P9A_311
IL_20047.1
IL_9QQB_2101/B5/3432:3435,
1/B5/3481:3482
Minor groove platform, major groove intercalation
geometric
IL_8CRE_089
IL_95583.2
IL_9QQB_2111/B5/3436:3437,
1/B5/3477:3480
No text annotation
geometric
IL_8CRE_090
IL_82107.5
IL_9QQB_2121/B5/3440:3442,
1/B5/3473:3474
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_9QQB_2131/B5/3442:3446,
1/B5/3471:3473
No text annotation
IL_9QQB_2141/B5/3447:3453,
1/B5/3464:3470
No text annotation
geometric
IL_8P9A_316
IL_88116.2
IL_9QQB_2151/B5/3512:3513,
1/B5/3543:3546
No text annotation
geometric
IL_8CRE_094
IL_22551.4
IL_9QQB_2161/B5/3513:3524,
1/B5/3540:3543
No text annotation
geometric
IL_8CRE_095
IL_42218.2
IL_9QQB_2171/B5/3627:3630,
1/B5/4309:4311
No text annotation
geometric
IL_8CRE_096
IL_55516.2
IL_9QQB_2181/B5/3632:3634,
1/B5/4304:4307
No text annotation
geometric
IL_8CRE_097
IL_83389.2
IL_9QQB_2191/B5/3645:3647,
1/B5/4134:4135
No text annotation
geometric
IL_8CRE_098
IL_89505.4
IL_9QQB_2201/B5/3648:3649,
1/B5/4130:4133
Minor groove platform
geometric
IL_8P9A_322
IL_51454.3
IL_9QQB_2211/B5/3659:3661,
1/B5/3927:3930
No text annotation
geometric
IL_8CRE_100
IL_85599.2
IL_9QQB_2221/B5/3677:3681,
1/B5/3791:3796
No text annotation
IL_9QQB_2231/B5/3687:3698,
1/B5/3783:3785
No text annotation
IL_9QQB_2241/B5/3702:3705,
1/B5/3766:3779
No text annotation
geometric
IL_3U4M_003
IL_75283.2
IL_9QQB_2251/B5/3810:3816,
1/B5/3907:3910
No text annotation
geometric
IL_8CRE_106
IL_00555.1
IL_9QQB_2261/B5/3823:3825,
1/B5/3840:3841
No text annotation
IL_9QQB_2271/B5/3861:3863,
1/B5/3895:3897
No text annotation
geometric
IL_4KTG_001
IL_10167.6
IL_9QQB_2281/B5/3866:3867,
1/B5/3890:3892
Single bulged C
geometric
IL_7PMM_001
IL_61258.15
IL_9QQB_2291/B5/3937:3938,
1/B5/3948:3950
Single bulged A
geometric
IL_8P9A_325
IL_31462.7
IL_9QQB_2301/B5/4037:4039,
1/B5/4063:4064
Single bulged A
geometric
IL_7MKY_001
IL_31462.7
IL_9QQB_2311/B5/4041:4044,
1/B5/4058:4061
No text annotation
geometric
IL_8CRE_440
IL_85033.2
IL_9QQB_2321/B5/4093:4096,
1/B5/4110:4111
Single stack bend with bulge
geometric
IL_8P9A_328
IL_90729.1
IL_9QQB_2331/B5/4146:4149,
1/B5/4186:4190
No text annotation
geometric
IL_8CRE_111
IL_68909.1
IL_9QQB_2341/B5/4149:4151,
1/B5/4185:4186
No text annotation
geometric
IL_8P9A_331
IL_07039.3
IL_9QQB_2351/B5/4151:4153,
1/B5/4181:4185
No text annotation
geometric
IL_8CRE_113
IL_51387.3
IL_9QQB_2361/B5/4158:4162,
1/B5/4172:4176
Triple sheared
geometric
IL_7A0S_087
IL_17948.2
IL_9QQB_2371/B5/4199:4200,
1/B5/4272:4274
No text annotation
geometric
IL_8P9A_334
IL_07039.3
IL_9QQB_2381/B5/4202:4204,
1/B5/4266:4270
No text annotation
geometric
IL_8P9A_335
IL_07785.1
IL_9QQB_2391/B5/4204:4205,
1/B5/4263:4266
No text annotation
geometric
IL_8P9A_336
IL_42626.2
IL_9QQB_2401/B5/4212:4214,
1/B5/4235:4237
Isolated non-canonical cWW pair
geometric
IL_8P9A_337
IL_87907.2
IL_9QQB_2411/B5/4212:4216,
1/B5/4231:4237
No text annotation
IL_9QQB_2421/B5/4214:4216,
1/B5/4231:4235
No text annotation
geometric
IL_3DD2_004
IL_55516.2
IL_9QQB_2431/B5/4283:4284,
1/B5/4293:4295
Single bulged A
geometric
IL_8P9A_399
IL_31462.7
IL_9QQB_2441/B5/4326:4328,
1/B5/4467:4469
Isolated cWH basepair
geometric
IL_4E5C_001
IL_10167.6
IL_9QQB_2451/B5/4328:4331,
1/B5/4463:4467
Double sheared
geometric
IL_8P9A_342
IL_09705.15
IL_9QQB_2461/B5/4336:4338,
1/B5/4364:4366
Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_87907.2
IL_9QQB_2471/B5/4342:4349,
1/B5/4354:4360
8x7 Sarcin-Ricin; G-bulge
geometric
IL_8CRE_125
IL_04346.10
IL_9QQB_2481/B5/4370:4375,
1/B5/4415:4419
No text annotation
IL_9QQB_2491/B5/4378:4383,
1/B5/4408:4412
No text annotation
geometric
IL_8P9A_346
IL_21001.1
IL_9QQB_2501/B5/4384:4386,
1/B5/4405:4407
Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.6
IL_9QQB_2511/B5/4387:4388,
1/B5/4401:4404
Multiple bulged bases
geometric
IL_5J7L_349
IL_42626.2
IL_9QQB_2521/B5/4426:4431,
1/B5/4451:4456
UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_9QQB_2531/B5/4486:4489,
1/B5/4697:4698
No text annotation
IL_9QQB_2541/B5/4490:4493,
1/B5/4693:4696
No text annotation
geometric
IL_8CRE_440
IL_85033.2
IL_9QQB_2551/B5/4496:4498,
1/B5/4687:4690
No text annotation
IL_9QQB_2561/B5/4503:4513,
1/B5/4607:4616
No text annotation
IL_9QQB_2571/B5/4516:4519,
1/B5/4602:4604
Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_51387.3
IL_9QQB_2581/B5/4624:4627,
1/B5/4670:4673
Tandem non-canonical cWW pairs
geometric
IL_4XW0_002
IL_77658.1
IL_9QQB_2591/B5/4630:4635,
1/B5/4663:4667
No text annotation
IL_9QQB_2601/B5/4638:4640,
1/B5/4659:4660
No text annotation
geometric
IL_8CRE_002
IL_61258.15
IL_9QQB_2611/B5/4711:4714,
1/B5/4722:4725
No text annotation
geometric
IL_8CRE_135
IL_77658.1
IL_9QQB_2621/B5/4731:4733,
1/B5/4796:4798
Isolated non-canonical cWW pair
geometric
IL_4RBZ_002
IL_87907.2
IL_9QQB_2631/B5/4735:4736,
1/B5/4792:4794
No text annotation
IL_9QQB_2641/B5/4739:4741,
1/B5/4784:4789
No text annotation
geometric
IL_8P9A_359
IL_43622.1
IL_9QQB_2651/B5/4742:4748,
1/B5/4778:4783
No text annotation
IL_9QQB_2661/B5/4751:4753,
1/B5/4774:4775
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9QQB_2671/B5/4753:4756,
1/B5/4771:4774
Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_9QQB_2681/B7/15:16,
1/B7/62:64
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_9QQB_2691/B7/21:27,
1/B7/52:57
No text annotation
geometric
IL_8OI5_135
IL_18487.1
IL_9QQB_2701/B7/28:29,
1/B7/48:51
Major groove minor groove platform; mini C-loop
geometric
IL_4WF9_126
IL_68140.4
IL_9QQB_2711/B7/32:36,
1/B7/41:45
Symmetric double minor groove platform
geometric
IL_5NS3_002
IL_58103.11
IL_9QQB_2721/B7/71:78,
1/B7/98:104
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_9QQB_2731/B7/79:81,
1/B7/95:97
No text annotation
geometric
IL_8CRE_473
IL_07785.1
IL_9QQB_2741/B7/82:85,
1/B7/92:94
Isolated non-canonical cWW pair
geometric
IL_8OI5_140
IL_87907.2
IL_9QQB_2751/B8/64:66,
1/B8/92:95
No text annotation
geometric
IL_7ELQ_002
IL_07785.1

Problematic loops

#loop idProblemSequence
IL_9QQB_171No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9QQB_0011/A2/40:41,
1/A2/482:488,
1/A2/513:515
No text annotation
geometric
J3_8P9A_068
J3_67856.4
J3_9QQB_0021/A2/40:47,
1/A2/480:488,
1/A2/513:515
No text annotation
geometric
J3_8CRE_072
J3_46317.4
J3_9QQB_0031/A2/223:239,
1/A2/280:289,
1/A2/296:299
No text annotation
J3_9QQB_0041/A2/683:686,
1/A2/918:923,
1/A2/1023:1024
No text annotation
J3_9QQB_0051/A2/683:686,
1/A2/918:924,
1/A2/1020:1024
No text annotation
J3_9QQB_0061/A2/817:820,
1/A2/830:832,
1/A2/844:849
No text annotation
geometric
J3_8P9A_073
J3_97642.1
J3_9QQB_0071/A2/939:942,
1/A2/986:994,
1/A2/1001:1005
No text annotation
geometric
J3_8P9A_074
J3_76375.1
J3_9QQB_0081/A2/1095:1097,
1/A2/1137:1141,
1/A2/1148:1152
No text annotation
J3_9QQB_0091/A2/1219:1222,
1/A2/1646:1652,
1/A2/1674:1681
No text annotation
geometric
J3_8P9A_076
J3_25303.4
J3_9QQB_0101/A2/1226:1229,
1/A2/1531:1533,
1/A2/1639:1642
No text annotation
geometric
J3_8CRE_079
J3_52655.4
J3_9QQB_0111/A2/1238:1245,
1/A2/1256:1267,
1/A2/1517:1521
No text annotation
J3_9QQB_0121/A2/1273:1278,
1/A2/1321:1325,
1/A2/1505:1511
No text annotation
geometric
J3_8P9A_079
J3_87797.1
J3_9QQB_0131/A2/1341:1346,
1/A2/1385:1390,
1/A2/1482:1487
No text annotation
J3_9QQB_0141/A2/1351:1352,
1/A2/1361:1364,
1/A2/1376:1380
No text annotation
geometric
J3_8P9A_081
J3_76043.3
J3_9QQB_0151/A2/1392:1396,
1/A2/1451:1457,
1/A2/1471:1480
No text annotation
J3_9QQB_0161/A2/1533:1537,
1/A2/1598:1605,
1/A2/1636:1639
No text annotation
geometric
J3_8CRE_086
J3_37047.6
J3_9QQB_0171/B5/112:116,
1/B5/155:160,
1/B5/275:278
No text annotation
J3_9QQB_0181/B5/351:367,
1/B5/374:379,
1/B8/21:24
No text annotation
geometric
J3_8P9A_045
J3_30040.2
J3_9QQB_0191/B5/380:387,
1/B5/414:415,
1/B8/19:20
No text annotation
geometric
J3_8P9A_046
J3_60031.2
J3_9QQB_0201/B5/380:390,
1/B5/401:415,
1/B8/19:20
No text annotation
geometric
J3_8CRE_006
J3_92134.2
J3_9QQB_0211/B5/451:455,
1/B5/695:699,
1/B5/1236:1240
No text annotation
J3_9QQB_0221/B5/1486:1492,
1/B5/1577:1579,
1/B5/1595:1598
No text annotation
geometric
J3_8P9A_049
J3_64189.2
J3_9QQB_0231/B5/1501:1503,
1/B5/1535:1539,
1/B5/1564:1567
No text annotation
geometric
J3_8CRE_010
J3_44724.7
J3_9QQB_0241/B5/1665:1666,
1/B5/1741:1745,
1/B5/1771:1776
No text annotation
J3_9QQB_0251/B5/1908:1910,
1/B5/1934:1940,
1/B5/1955:1957
No text annotation
geometric
J3_4V9F_004
J3_28621.5
J3_9QQB_0261/B5/2236:2242,
1/B5/2648:2650,
1/B5/2662:2665
No text annotation
geometric
J3_8CRE_013
J3_19545.2
J3_9QQB_0271/B5/2245:2248,
1/B5/2628:2634,
1/B5/2643:2645
No text annotation
geometric
J3_8CRE_014
J3_19545.2
J3_9QQB_0281/B5/2283:2288,
1/B5/2358:2362,
1/B5/2379:2380
No text annotation
geometric
J3_8P9A_055
J3_31965.2
J3_9QQB_0291/B5/2294:2299,
1/B5/2308:2319,
1/B5/2344:2351
No text annotation
J3_9QQB_0301/B5/2394:2398,
1/B5/2415:2418,
1/B5/2600:2610
No text annotation
J3_9QQB_0311/B5/2418:2419,
1/B5/2428:2432,
1/B5/2599:2600
No text annotation
geometric
J3_8P9A_087
J3_75962.2
J3_9QQB_0321/B5/3669:3671,
1/B5/3802:3806,
1/B5/3914:3919
Kink-turn in J3
geometric
J3_5J7L_044
J3_89368.5
J3_9QQB_0331/B5/3819:3822,
1/B5/3842:3857,
1/B5/3901:3904
No text annotation
J3_9QQB_0341/B5/3974:3976,
1/B5/4077:4088,
1/B5/4116:4121
No text annotation
geometric
J3_8P9A_061
J3_20992.1
J3_9QQB_0351/B5/3987:3991,
1/B5/4009:4015,
1/B5/4024:4029
No text annotation
J3_9QQB_0361/B5/4209:4212,
1/B5/4237:4239,
1/B5/4253:4259
No text annotation
geometric
J3_8P9A_063
J3_62630.1
J3_9QQB_0371/B5/4498:4501,
1/B5/4618:4622,
1/B5/4675:4687
No text annotation
J3_9QQB_0381/B5/4709:4711,
1/B5/4725:4730,
1/B5/4799:4802
No text annotation
J3_9QQB_0391/B7/9:14,
1/B7/65:66,
1/B7/109:110
No text annotation
geometric
J3_8OI5_025
J3_12003.2
J3_9QQB_0401/B8/44:45,
1/B8/58:64,
1/B8/95:99
No text annotation
J4_9QQB_0011/A2/98:106,
1/A2/356:358,
1/A2/406:410,
1/A2/432:433
No text annotation
J4_9QQB_0021/A2/672:674,
1/A2/1033:1038,
1/A2/1079:1090,
1/A2/1161:1162
No text annotation
J4_9QQB_0031/AT/7:10,
1/AT/25:27,
1/AT/43:49,
1/AT/65:66
No text annotation
J4_9QQB_0041/B5/111:112,
1/B5/278:283,
1/B5/304:310,
1/B5/327:330
No text annotation
J4_9QQB_0051/B5/196:199,
1/B5/215:222,
1/B5/226:228,
1/B5/240:244
No text annotation
J4_9QQB_0061/B5/706:707,
1/B5/855:861,
1/B5/871:878,
1/B5/1222:1228
No text annotation
J4_9QQB_0071/B5/883:885,
1/B5/985:987,
1/B5/1126:1127,
1/B5/1212:1217
No text annotation
J4_9QQB_0081/B5/2208:2214,
1/B5/2232:2234,
1/B5/2667:2672,
1/B5/3588:3589
No text annotation
J4_9QQB_0091/B5/2249:2253,
1/B5/2277:2282,
1/B5/2381:2382,
1/B5/2620:2627
No text annotation
J4_9QQB_0101/B5/2252:2253,
1/B5/2277:2282,
1/B5/2381:2382,
1/B5/2620:2626
No text annotation
J4_9QQB_0111/B5/2294:2299,
1/B5/2308:2312,
1/B5/2314:2319,
1/B5/2344:2351
No text annotation
J4_9QQB_0121/B5/2461:2462,
1/B5/2480:2485,
1/B5/2535:2541,
1/B5/2561:2562
No text annotation
J4_9QQB_0131/B5/3366:3370,
1/B5/3382:3386,
1/B5/3422:3426,
1/B5/3553:3558
No text annotation
J4_9QQB_0141/B5/3428:3430,
1/B5/3484:3485,
1/B5/3503:3512,
1/B5/3546:3551
No text annotation
J4_9QQB_0151/B5/3977:3981,
1/B5/4035:4037,
1/B5/4064:4065,
1/B5/4074:4076
No text annotation
J4_9QQB_0161/B5/3977:3981,
1/B5/4035:4039,
1/B5/4063:4065,
1/B5/4074:4076
No text annotation
J4_9QQB_0171/B5/4333:4336,
1/B5/4366:4367,
1/B5/4422:4424,
1/B5/4458:4461
No text annotation
J5_9QQB_0011/A2/30:34,
1/A2/522:528,
1/A2/559:564,
1/A2/593:596,
1/A2/642:645
No text annotation
J5_9QQB_0021/A2/30:34,
1/A2/522:528,
1/A2/559:566,
1/A2/586:596,
1/A2/642:645
No text annotation
J5_9QQB_0031/A2/53:56,
1/A2/89:96,
1/A2/435:437,
1/A2/458:460,
1/A2/471:475
No text annotation
J5_9QQB_0041/A2/123:129,
1/A2/183:185,
1/A2/214:215,
1/A2/311:313,
1/A2/338:342
No text annotation
J5_9QQB_0051/B5/20:21,
1/B8/35:42,
1/B8/101:106,
1/B8/113:114,
1/B8/136:137
No text annotation
J5_9QQB_0061/B5/1279:1284,
1/B5/1471:1474,
1/B5/1613:1616,
1/B5/2131:2133,
1/B5/2188:2194
No text annotation
J5_9QQB_0071/B5/2698:2706,
1/B5/2730:2731,
1/B5/3345:3346,
1/B5/3350:3358,
1/B5/3567:3569
No text annotation
J5_9QQB_0081/B5/3635:3642,
1/B5/4138:4146,
1/B5/4190:4199,
1/B5/4274:4280,
1/B5/4298:4303
No text annotation
J5_9QQB_0091/B5/3652:3655,
1/B5/3934:3937,
1/B5/3950:3951,
1/B5/3973:3974,
1/B5/4121:4127
No text annotation
J6_9QQB_0011/B5/21:26,
1/B5/57:67,
1/B5/74:78,
1/B5/105:109,
1/B5/332:339,
1/B8/33:35
No text annotation
J6_9QQB_0021/B5/1296:1299,
1/B5/1328:1332,
1/B5/1339:1343,
1/B5/1373:1376,
1/B5/1419:1421,
1/B5/1454:1459
No text annotation
J6_9QQB_0031/B5/3652:3655,
1/B5/3934:3937,
1/B5/3950:3951,
1/B5/3973:3976,
1/B5/4077:4088,
1/B5/4116:4127
No text annotation
J7_9QQB_0011/B5/1621:1626,
1/B5/1639:1640,
1/B5/1791:1794,
1/B5/1818:1823,
1/B5/1834:1838,
1/B5/2016:2017,
1/B5/2121:2126
No text annotation

Problematic loops

No problematic loops


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