9QQB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9QQB_001 | 1/A2/7:17 | No text annotation | geometric HL_8CRE_191 HL_89881.5 | |
| HL_9QQB_002 | 1/A2/69:80 | No text annotation | ||
| HL_9QQB_003 | 1/A2/156:162 | GNRA related | geometric HL_8CRE_193 HL_37824.8 | |
| HL_9QQB_004 | 1/A2/197:202 | GNRA | geometric HL_3RG5_007 HL_37824.8 | |
| HL_9QQB_005 | 1/A2/289:296 | T-loop with 1 bulged base | geometric HL_8CRE_196 HL_77436.5 | |
| HL_9QQB_006 | 1/A2/323:330 | No text annotation | ||
| HL_9QQB_007 | 1/A2/378:388 | No text annotation | ||
| HL_9QQB_008 | 1/A2/417:422 | GNRA variation | geometric HL_8CRE_199 HL_37824.8 | |
| HL_9QQB_009 | 1/A2/442:453 | No text annotation | geometric HL_8CRE_200 HL_06226.4 | |
| HL_9QQB_010 | 1/A2/463:468 | UNCG | geometric HL_8P9A_200 HL_34617.5 | |
| HL_9QQB_011 | 1/A2/499:505 | No text annotation | geometric HL_8P9A_207 HL_48417.6 | |
| HL_9QQB_012 | 1/A2/540:545 | No text annotation | ||
| HL_9QQB_013 | 1/A2/570:582 | No text annotation | geometric HL_8P9A_203 HL_05304.3 | |
| HL_9QQB_014 | 1/A2/619:624 | No text annotation | geometric HL_8CRE_205 HL_93535.1 | |
| HL_9QQB_015 | 1/A2/821:829 | No text annotation | geometric HL_8CRE_207 HL_85367.2 | |
| HL_9QQB_016 | 1/A2/835:839 | No text annotation | geometric HL_8CRE_052 HL_75660.5 | |
| HL_9QQB_017 | 1/A2/886:902 | No text annotation | ||
| HL_9QQB_018 | 1/A2/958:967 | No text annotation | geometric HL_8CRE_210 HL_75293.5 | |
| HL_9QQB_019 | 1/A2/995:1000 | GNRA | geometric HL_8CRE_211 HL_37824.8 | |
| HL_9QQB_020 | 1/A2/1055:1065 | No text annotation | geometric HL_4LFB_017 HL_75293.5 | |
| HL_9QQB_021 | 1/A2/1115:1120 | No text annotation | ||
| HL_9QQB_022 | 1/A2/1142:1147 | GNRA | geometric HL_8CRE_214 HL_37824.8 | |
| HL_9QQB_023 | 1/A2/1179:1184 | GNRA | geometric HL_4LFB_020 HL_37824.8 | |
| HL_9QQB_024 | 1/A2/1246:1255 | No text annotation | geometric HL_8CRE_216 HL_50779.4 | |
| HL_9QQB_025 | 1/A2/1296:1305 | GNRA wlth extra near cWW | geometric HL_8CRE_217 HL_81538.2 | |
| HL_9QQB_026 | 1/A2/1354:1359 | GNRA | geometric HL_8P9A_217 HL_37824.8 | |
| HL_9QQB_027 | 1/A2/1367:1374 | T-loop related | geometric HL_8CRE_219 HL_77436.5 | |
| HL_9QQB_028 | 1/A2/1418:1423 | No text annotation | geometric HL_2PJP_001 HL_56131.2 | |
| HL_9QQB_029 | 1/A2/1461:1467 | No text annotation | geometric HL_8CRE_221 HL_37369.2 | |
| HL_9QQB_030 | 1/A2/1566:1571 | GNRA | geometric HL_3E5C_002 HL_37824.8 | |
| HL_9QQB_031 | 1/A2/1615:1626 | No text annotation | geometric HL_8CRE_223 HL_67079.1 | |
| HL_9QQB_032 | 1/A2/1659:1667 | T-loop with 1 bulged base | geometric HL_8CRE_224 HL_01609.3 | |
| HL_9QQB_033 | 1/A2/1764:1770 | No text annotation | ||
| HL_9QQB_034 | 1/A2/1848:1853 | GNRA | geometric HL_5J7L_031 HL_37824.8 | |
| HL_9QQB_035 | 1/AT/12:23 | No text annotation | ||
| HL_9QQB_036 | 1/AT/31:39 | tRNA anticodon loop | geometric HL_4TUE_034 HL_06059.7 | |
| HL_9QQB_037 | 1/AT/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5AXM_003 HL_28252.9 | |
| HL_9QQB_038 | 1/B5/37:44 | No text annotation | geometric HL_8P9A_113 HL_30068.2 | |
| HL_9QQB_039 | 1/B5/68:73 | No text annotation | geometric HL_8CRE_002 HL_53890.2 | |
| HL_9QQB_040 | 1/B5/89:95 | No text annotation | geometric HL_4WF9_008 HL_37369.2 | |
| HL_9QQB_041 | 1/B5/131:137 | No text annotation | geometric HL_7VTI_001 HL_48417.6 | |
| HL_9QQB_042 | 1/B5/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_3VJR_001 HL_01609.3 | |
| HL_9QQB_043 | 1/B5/222:226 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_9QQB_044 | 1/B5/230:238 | No text annotation | ||
| HL_9QQB_045 | 1/B5/289:298 | T-loop related | geometric HL_8CRE_219 HL_77436.5 | |
| HL_9QQB_046 | 1/B5/314:323 | No text annotation | geometric HL_8CRE_009 HL_77600.2 | |
| HL_9QQB_047 | 1/B5/368:373 | GNRA | geometric HL_8CRE_029 HL_37824.8 | |
| HL_9QQB_048 | 1/B5/393:398 | GNRA | geometric HL_5F9F_003 HL_37824.8 | |
| HL_9QQB_049 | 1/B5/773:778 | UNCG | geometric HL_4LFB_009 HL_34617.5 | |
| HL_9QQB_050 | 1/B5/862:870 | No text annotation | ||
| HL_9QQB_051 | 1/B5/1069:1074 | Mini UNCG | geometric HL_6AAX_001 HL_56334.1 | |
| HL_9QQB_052 | 1/B5/1261:1270 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 HL_28252.9 | |
| HL_9QQB_053 | 1/B5/1308:1317 | No text annotation | ||
| HL_9QQB_054 | 1/B5/1333:1338 | GNRA | geometric HL_8CRE_015 HL_37824.8 | |
| HL_9QQB_055 | 1/B5/1392:1403 | No text annotation | ||
| HL_9QQB_056 | 1/B5/1435:1439 | Mini UNCG | geometric HL_8XZL_001 HL_43517.1 | |
| HL_9QQB_057 | 1/B5/1516:1521 | GNRA | geometric HL_5J7L_003 HL_37824.8 | |
| HL_9QQB_058 | 1/B5/1548:1557 | No text annotation | geometric HL_8CRE_019 HL_88205.2 | |
| HL_9QQB_059 | 1/B5/1582:1590 | No text annotation | geometric HL_8P9A_133 HL_87553.1 | |
| HL_9QQB_060 | 1/B5/1630:1635 | No text annotation | geometric HL_8CRE_021 HL_70782.2 | |
| HL_9QQB_061 | 1/B5/1702:1708 | No text annotation | geometric HL_4WSM_210 HL_59735.5 | |
| HL_9QQB_062 | 1/B5/1755:1762 | No text annotation | ||
| HL_9QQB_063 | 1/B5/1803:1809 | GNRA | geometric HL_8CRE_024 HL_37824.8 | |
| HL_9QQB_064 | 1/B5/1825:1832 | No text annotation | geometric HL_8CRE_025 HL_42998.2 | |
| HL_9QQB_065 | 1/B5/1917:1927 | No text annotation | geometric HL_8CRE_026 HL_19210.3 | |
| HL_9QQB_066 | 1/B5/1945:1952 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_9QQB_067 | 1/B5/2100:2104 | No text annotation | ||
| HL_9QQB_068 | 1/B5/2160:2165 | GNRA | geometric HL_8CRE_029 HL_37824.8 | |
| HL_9QQB_069 | 1/B5/2219:2227 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_030 HL_28252.9 | |
| HL_9QQB_070 | 1/B5/2263:2269 | Pseudoknot geometry with 3' bulge | geometric HL_9DFE_036 HL_57176.2 | |
| HL_9QQB_071 | 1/B5/2301:2306 | GNRA variation | geometric HL_8CRE_032 HL_37824.8 | |
| HL_9QQB_072 | 1/B5/2312:2314 | No text annotation | ||
| HL_9QQB_073 | 1/B5/2330:2334 | No text annotation | ||
| HL_9QQB_074 | 1/B5/2366:2375 | No text annotation | geometric HL_8CRE_034 HL_81545.2 | |
| HL_9QQB_075 | 1/B5/2404:2409 | GNRA | geometric HL_5F9F_003 HL_37824.8 | |
| HL_9QQB_076 | 1/B5/2421:2426 | GNRA | geometric HL_8CRE_035 HL_37824.8 | |
| HL_9QQB_077 | 1/B5/2467:2475 | Pseudoknot geometry | geometric HL_8CRE_036 HL_77082.1 | |
| HL_9QQB_078 | 1/B5/2507:2513 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_9QQB_079 | 1/B5/2547:2555 | No text annotation | ||
| HL_9QQB_080 | 1/B5/2635:2642 | No text annotation | geometric HL_8CRE_040 HL_89567.2 | |
| HL_9QQB_081 | 1/B5/2653:2659 | GNRA | geometric HL_8P9A_153 HL_37824.8 | |
| HL_9QQB_082 | 1/B5/2715:2720 | UNCG | geometric HL_8P9A_154 HL_34617.5 | |
| HL_9QQB_083 | 1/B5/3346:3350 | No text annotation | ||
| HL_9QQB_084 | 1/B5/3371:3381 | No text annotation | geometric HL_8CRE_044 HL_01962.2 | |
| HL_9QQB_085 | 1/B5/3400:3406 | GNRA variation | geometric HL_4QK9_001 HL_37824.8 | |
| HL_9QQB_086 | 1/B5/3456:3461 | GNRA | geometric HL_3SUX_002 HL_37824.8 | |
| HL_9QQB_087 | 1/B5/3489:3499 | No text annotation | geometric HL_8CRE_047 HL_25847.2 | |
| HL_9QQB_088 | 1/B5/3528:3536 | No text annotation | geometric HL_8CRE_048 HL_20167.2 | |
| HL_9QQB_089 | 1/B5/3605:3614 | No text annotation | geometric HL_8CRE_049 HL_61996.3 | |
| HL_9QQB_090 | 1/B5/3831:3834 | No text annotation | ||
| HL_9QQB_091 | 1/B5/3939:3947 | No text annotation | geometric HL_4V9F_055 HL_85367.2 | |
| HL_9QQB_092 | 1/B5/3956:3968 | No text annotation | geometric HL_4WF9_050 HL_91939.2 | |
| HL_9QQB_093 | 1/B5/3996:4004 | No text annotation | geometric HL_4V9F_057 HL_50860.2 | |
| HL_9QQB_094 | 1/B5/4016:4023 | Pseudoknot geometry | geometric HL_8CRE_056 HL_93324.4 | |
| HL_9QQB_095 | 1/B5/4047:4055 | No text annotation | geometric HL_8CRE_057 HL_80599.2 | |
| HL_9QQB_096 | 1/B5/4067:4072 | GNRA | geometric HL_8P9A_170 HL_37824.8 | |
| HL_9QQB_097 | 1/B5/4098:4108 | No text annotation | geometric HL_7JRT_001 HL_67407.5 | |
| HL_9QQB_098 | 1/B5/4163:4171 | No text annotation | geometric HL_8P9A_172 HL_32735.2 | |
| HL_9QQB_099 | 1/B5/4220:4227 | GNRA variation | geometric HL_8P9A_173 HL_31585.4 | |
| HL_9QQB_100 | 1/B5/4241:4251 | No text annotation | ||
| HL_9QQB_101 | 1/B5/4286:4291 | GNRA | geometric HL_5J7L_027 HL_37824.8 | |
| HL_9QQB_102 | 1/B5/4349:4354 | GNRA | geometric HL_8ITS_002 HL_37824.8 | |
| HL_9QQB_103 | 1/B5/4392:4397 | No text annotation | geometric HL_8CRE_065 HL_65794.5 | |
| HL_9QQB_104 | 1/B5/4434:4448 | No text annotation | geometric HL_8CRE_066 HL_74055.2 | |
| HL_9QQB_105 | 1/B5/4645:4654 | No text annotation | ||
| HL_9QQB_106 | 1/B5/4714:4722 | No text annotation | geometric HL_8CRE_069 HL_64690.6 | |
| HL_9QQB_107 | 1/B5/4760:4767 | No text annotation | geometric HL_5J7L_149 HL_09452.1 | |
| HL_9QQB_108 | 1/B7/32:45 | No text annotation | geometric HL_8OI5_068 HL_13971.1 | |
| HL_9QQB_109 | 1/B7/36:41 | No text annotation | geometric HL_8OI5_069 HL_47787.2 | |
| HL_9QQB_110 | 1/B7/86:91 | GNRA | geometric HL_9DXL_001 HL_37824.8 | |
| HL_9QQB_111 | 1/B8/47:56 | No text annotation | geometric HL_8CRE_074 HL_93438.2 | |
| HL_9QQB_112 | 1/B8/68:90 | No text annotation | ||
| HL_9QQB_113 | 1/B8/107:112 | No text annotation | geometric HL_8CRE_076 HL_53890.2 | |
| HL_9QQB_114 | 1/B8/122:128 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9QQB_001 | 1/A2/23:25, 1/A2/650:652 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
| IL_9QQB_002 | 1/A2/34:36, 1/A2/520:522 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_9QQB_003 | 1/A2/37:40, 1/A2/515:519 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_9QQB_004 | 1/A2/41:47, 1/A2/480:482 | No text annotation | geometric IL_8P9A_376 IL_88082.1 | |
| IL_9QQB_005 | 1/A2/49:51, 1/A2/477:478 | Minor groove platform | geometric IL_8P9A_377 IL_51454.3 | |
| IL_9QQB_006 | 1/A2/57:62, 1/A2/86:88 | No text annotation | geometric IL_8P9A_378 IL_61299.4 | |
| IL_9QQB_007 | 1/A2/63:68, 1/A2/81:85 | No text annotation | geometric IL_8P9A_379 IL_21667.1 | |
| IL_9QQB_008 | 1/A2/108:110, 1/A2/352:354 | Isolated non-canonical cWW pair | geometric IL_8FEQ_001 IL_28037.2 | |
| IL_9QQB_009 | 1/A2/110:115, 1/A2/349:352 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_9QQB_010 | 1/A2/116:121, 1/A2/344:348 | No text annotation | geometric IL_8CRE_399 IL_29223.1 | |
| IL_9QQB_011 | 1/A2/145:151, 1/A2/167:174 | No text annotation | geometric IL_8CRE_400 IL_80604.6 | |
| IL_9QQB_012 | 1/A2/152:154, 1/A2/164:166 | Isolated cWH basepair | geometric IL_6RA4_002 IL_10167.6 | |
| IL_9QQB_013 | 1/A2/188:192, 1/A2/207:211 | Double sheared with non-canonical cWW | geometric IL_1U6B_002 IL_17948.2 | |
| IL_9QQB_014 | 1/A2/216:219, 1/A2/303:310 | No text annotation | ||
| IL_9QQB_015 | 1/A2/313:315, 1/A2/337:338 | Single bulged A | geometric IL_8P9A_388 IL_31462.7 | |
| IL_9QQB_016 | 1/A2/318:320, 1/A2/333:334 | Single stack bend | geometric IL_8OI5_137 IL_90729.1 | |
| IL_9QQB_017 | 1/A2/360:365, 1/A2/397:404 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.3 | |
| IL_9QQB_018 | 1/A2/367:372, 1/A2/394:395 | No text annotation | geometric IL_8CRE_409 IL_99380.1 | |
| IL_9QQB_019 | 1/A2/412:414, 1/A2/425:430 | No text annotation | geometric IL_8CRE_410 IL_73789.1 | |
| IL_9QQB_020 | 1/A2/438:440, 1/A2/455:457 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10167.6 | |
| IL_9QQB_021 | 1/A2/460:462, 1/A2/469:471 | No text annotation | geometric IL_8CRE_412 IL_42997.3 | |
| IL_9QQB_022 | 1/A2/488:490, 1/A2/512:513 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_9QQB_023 | 1/A2/492:497, 1/A2/507:510 | No text annotation | ||
| IL_9QQB_024 | 1/A2/530:531, 1/A2/555:557 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_9QQB_025 | 1/A2/536:538, 1/A2/547:550 | No text annotation | ||
| IL_9QQB_026 | 1/A2/564:566, 1/A2/586:593 | No text annotation | geometric IL_8CRE_418 IL_86136.1 | |
| IL_9QQB_027 | 1/A2/567:570, 1/A2/582:585 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_77658.1 | |
| IL_9QQB_028 | 1/A2/600:607, 1/A2/637:638 | SSU/LSU pseudoknot | geometric IL_8P9A_402 IL_41203.4 | |
| IL_9QQB_029 | 1/A2/607:609, 1/A2/636:637 | No text annotation | geometric IL_8CRE_422 IL_89505.4 | |
| IL_9QQB_030 | 1/A2/612:618, 1/A2/625:633 | No text annotation | geometric IL_8P9A_404 IL_54177.4 | |
| IL_9QQB_031 | 1/A2/664:666, 1/A2/1163:1165 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_9QQB_032 | 1/A2/666:672, 1/A2/1162:1163 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_9QQB_033 | 1/A2/674:676, 1/A2/1031:1033 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_9QQB_034 | 1/A2/677:681, 1/A2/1026:1030 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_17136.7 | |
| IL_9QQB_035 | 1/A2/693:696, 1/A2/732:735 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_85033.2 | |
| IL_9QQB_036 | 1/A2/746:755, 1/A2/791:797 | No text annotation | ||
| IL_9QQB_037 | 1/A2/803:804, 1/A2/861:864 | No text annotation | geometric IL_8CRE_428 IL_68140.4 | |
| IL_9QQB_038 | 1/A2/806:808, 1/A2/857:859 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_87907.2 | |
| IL_9QQB_039 | 1/A2/808:816, 1/A2/850:857 | No text annotation | ||
| IL_9QQB_040 | 1/A2/834:835, 1/A2/839:842 | Multiple bulged bases | geometric IL_4V9F_088 IL_42626.2 | |
| IL_9QQB_041 | 1/A2/875:877, 1/A2/911:913 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_9QQB_042 | 1/A2/878:880, 1/A2/908:910 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_9QQB_043 | 1/A2/923:924, 1/A2/1020:1023 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_50694.7 | |
| IL_9QQB_044 | 1/A2/926:927, 1/A2/1016:1018 | Single bulged U | geometric IL_6UFH_004 IL_89505.4 | |
| IL_9QQB_045 | 1/A2/929:932, 1/A2/1011:1014 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_85033.2 | |
| IL_9QQB_046 | 1/A2/932:936, 1/A2/1008:1011 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_85033.2 | |
| IL_9QQB_047 | 1/A2/943:946, 1/A2/982:985 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_85033.2 | |
| IL_9QQB_048 | 1/A2/953:957, 1/A2/968:975 | Kink-turn | geometric IL_6UFM_001 IL_01488.3 | |
| IL_9QQB_049 | 1/A2/1043:1048, 1/A2/1072:1074 | No text annotation | geometric IL_8CRE_437 IL_97273.1 | |
| IL_9QQB_050 | 1/A2/1048:1052, 1/A2/1068:1072 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_17136.7 | |
| IL_9QQB_051 | 1/A2/1092:1094, 1/A2/1153:1159 | No text annotation | geometric IL_8CRE_439 IL_82706.1 | |
| IL_9QQB_052 | 1/A2/1099:1104, 1/A2/1130:1135 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.1 | |
| IL_9QQB_053 | 1/A2/1109:1111, 1/A2/1124:1125 | Minor groove platform | geometric IL_8P9A_401 IL_51454.3 | |
| IL_9QQB_054 | 1/A2/1169:1176, 1/A2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_8CRE_442 IL_41756.4 | |
| IL_9QQB_055 | 1/A2/1204:1205, 1/A2/1695:1697 | Single bulged A | geometric IL_5J7L_039 IL_31462.7 | |
| IL_9QQB_056 | 1/A2/1207:1209, 1/A2/1692:1693 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_9QQB_057 | 1/A2/1215:1218, 1/A2/1682:1686 | C-loop | geometric IL_8CRE_445 IL_63596.11 | |
| IL_9QQB_058 | 1/A2/1231:1233, 1/A2/1527:1529 | Isolated non-canonical cWW pair | geometric IL_8P9A_432 IL_87907.2 | |
| IL_9QQB_059 | 1/A2/1236:1237, 1/A2/1522:1524 | Minor groove platform | geometric IL_8P9A_433 IL_51454.3 | |
| IL_9QQB_060 | 1/A2/1271:1273, 1/A2/1511:1513 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_87907.2 | |
| IL_9QQB_061 | 1/A2/1282:1288, 1/A2/1315:1317 | No text annotation | ||
| IL_9QQB_062 | 1/A2/1282:1291, 1/A2/1310:1317 | No text annotation | ||
| IL_9QQB_063 | 1/A2/1288:1291, 1/A2/1310:1315 | No text annotation | ||
| IL_9QQB_064 | 1/A2/1291:1294, 1/A2/1307:1310 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_9QQB_065 | 1/A2/1326:1328, 1/A2/1503:1504 | No text annotation | geometric IL_8CRE_451 IL_89505.4 | |
| IL_9QQB_066 | 1/A2/1330:1334, 1/A2/1499:1501 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_9QQB_067 | 1/A2/1330:1336, 1/A2/1493:1501 | No text annotation | geometric IL_8P9A_439 IL_86012.1 | |
| IL_9QQB_068 | 1/A2/1334:1336, 1/A2/1493:1499 | No text annotation | geometric IL_8P9A_440 IL_49061.1 | |
| IL_9QQB_069 | 1/A2/1338:1339, 1/A2/1489:1491 | Single bulged A | geometric IL_8CRE_455 IL_31462.7 | |
| IL_9QQB_070 | 1/A2/1348:1350, 1/A2/1381:1383 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10167.6 | |
| IL_9QQB_071 | 1/A2/1364:1366, 1/A2/1375:1376 | Minor groove platform | geometric IL_8CRE_457 IL_51454.3 | |
| IL_9QQB_072 | 1/A2/1396:1400, 1/A2/1448:1451 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_9QQB_073 | 1/A2/1403:1406, 1/A2/1442:1445 | No text annotation | geometric IL_8P9A_445 IL_78800.1 | |
| IL_9QQB_074 | 1/A2/1409:1410, 1/A2/1433:1439 | No text annotation | ||
| IL_9QQB_075 | 1/A2/1413:1414, 1/A2/1428:1430 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_9QQB_076 | 1/A2/1417:1418, 1/A2/1423:1425 | No text annotation | ||
| IL_9QQB_077 | 1/A2/1538:1540, 1/A2/1595:1597 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_87907.2 | |
| IL_9QQB_078 | 1/A2/1542:1551, 1/A2/1583:1593 | No text annotation | ||
| IL_9QQB_079 | 1/A2/1551:1559, 1/A2/1578:1583 | No text annotation | ||
| IL_9QQB_080 | 1/A2/1561:1563, 1/A2/1574:1576 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_9QQB_081 | 1/A2/1605:1611, 1/A2/1630:1636 | No text annotation | ||
| IL_9QQB_082 | 1/A2/1701:1703, 1/A2/1834:1837 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_9QQB_083 | 1/A2/1703:1706, 1/A2/1830:1834 | No text annotation | geometric IL_5J7L_059 IL_65718.4 | |
| IL_9QQB_084 | 1/A2/1707:1709, 1/A2/1827:1829 | Isolated non-canonical cWW pair | geometric IL_5J7L_363 IL_87907.2 | |
| IL_9QQB_085 | 1/A2/1709:1712, 1/A2/1823:1827 | No text annotation | geometric IL_8CRE_401 IL_51479.1 | |
| IL_9QQB_086 | 1/A2/1715:1717, 1/A2/1818:1820 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_87907.2 | |
| IL_9QQB_087 | 1/A2/1718:1721, 1/A2/1814:1817 | Double sheared | geometric IL_8P9A_457 IL_09705.15 | |
| IL_9QQB_088 | 1/A2/1721:1723, 1/A2/1813:1814 | No text annotation | geometric IL_8CRE_472 IL_89505.4 | |
| IL_9QQB_089 | 1/A2/1730:1732, 1/A2/1804:1806 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_07785.1 | |
| IL_9QQB_090 | 1/A2/1734:1737, 1/A2/1799:1802 | Double sheared | geometric IL_8CRE_474 IL_09705.15 | |
| IL_9QQB_091 | 1/A2/1740:1742, 1/A2/1794:1796 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
| IL_9QQB_092 | 1/A2/1743:1747, 1/A2/1789:1793 | Triple sheared | geometric IL_9DFE_075 IL_50730.2 | |
| IL_9QQB_093 | 1/A2/1751:1752, 1/A2/1783:1785 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_9QQB_094 | 1/A2/1752:1754, 1/A2/1780:1783 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_9QQB_095 | 1/B5/6:7, 1/B8/149:151 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_9QQB_096 | 1/B5/12:14, 1/B8/143:144 | No text annotation | geometric IL_8CRE_003 IL_89505.4 | |
| IL_9QQB_097 | 1/B5/16:18, 1/B8/139:141 | Isolated non-canonical cWW pair | geometric IL_7ECN_001 IL_87907.2 | |
| IL_9QQB_098 | 1/B5/26:27, 1/B5/55:57 | Single stack bend | geometric IL_8CRE_004 IL_90729.1 | |
| IL_9QQB_099 | 1/B5/30:37, 1/B5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_9QQB_100 | 1/B5/81:88, 1/B5/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_1JBR_001 IL_04346.10 | |
| IL_9QQB_101 | 1/B5/118:121, 1/B5/152:153 | No text annotation | geometric IL_6XJQ_007 IL_56987.1 | |
| IL_9QQB_102 | 1/B5/118:122, 1/B5/147:153 | No text annotation | ||
| IL_9QQB_103 | 1/B5/121:122, 1/B5/147:152 | No text annotation | geometric IL_4V9F_009 IL_92634.2 | |
| IL_9QQB_104 | 1/B5/125:126, 1/B5/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_9QQB_105 | 1/B5/168:173, 1/B5/263:267 | No text annotation | ||
| IL_9QQB_106 | 1/B5/180:182, 1/B5/255:256 | Single stack bend | geometric IL_8P9A_328 IL_90729.1 | |
| IL_9QQB_107 | 1/B5/184:189, 1/B5/252:253 | No text annotation | ||
| IL_9QQB_108 | 1/B5/195:196, 1/B5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_9QQB_109 | 1/B5/199:201, 1/B5/214:215 | No text annotation | geometric IL_8CRE_013 IL_89505.4 | |
| IL_9QQB_110 | 1/B5/339:342, 1/B8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_9QQB_111 | 1/B5/348:350, 1/B8/25:26 | Single bulged A | geometric IL_8CRE_014 IL_31462.7 | |
| IL_9QQB_112 | 1/B5/387:390, 1/B5/401:414 | No text annotation | geometric IL_8CRE_015 IL_81516.2 | |
| IL_9QQB_113 | 1/B5/415:421, 1/B8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_9QQB_114 | 1/B5/443:446, 1/B5/1244:1248 | No text annotation | ||
| IL_9QQB_115 | 1/B5/448:450, 1/B5/1241:1242 | Single bulged C | geometric IL_4C7O_003 IL_61258.15 | |
| IL_9QQB_116 | 1/B5/459:460, 1/B5/689:691 | Single bulged C | geometric IL_1S03_002 IL_61258.15 | |
| IL_9QQB_117 | 1/B5/462:464, 1/B5/685:687 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_87907.2 | |
| IL_9QQB_118 | 1/B5/466:472, 1/B5/676:683 | No text annotation | ||
| IL_9QQB_119 | 1/B5/481:483, 1/B5/666:667 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_9QQB_120 | 1/B5/483:486, 1/B5/665:666 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_9QQB_121 | 1/B5/488:489, 1/B5/659:663 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_9QQB_122 | 1/B5/492:494, 1/B5/655:656 | Single bulged U | geometric IL_8TQX_002 IL_89505.4 | |
| IL_9QQB_123 | 1/B5/498:500, 1/B5/650:651 | No text annotation | ||
| IL_9QQB_124 | 1/B5/501:506, 1/B5/648:649 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_9QQB_125 | 1/B5/510:512, 1/B5/643:644 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_9QQB_126 | 1/B5/514:517, 1/B5/640:641 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
| IL_9QQB_127 | 1/B5/522:523, 1/B5/632:635 | No text annotation | ||
| IL_9QQB_128 | 1/B5/703:704, 1/B5/1230:1232 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_9QQB_129 | 1/B5/717:718, 1/B5/842:845 | Multiple bulged bases | geometric IL_7Q80_003 IL_84476.1 | |
| IL_9QQB_130 | 1/B5/721:725, 1/B5/838:839 | No text annotation | ||
| IL_9QQB_131 | 1/B5/726:729, 1/B5/827:837 | No text annotation | ||
| IL_9QQB_132 | 1/B5/731:734, 1/B5/822:825 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_9QQB_133 | 1/B5/740:747, 1/B5/808:816 | No text annotation | geometric IL_8CRE_022 IL_43858.1 | |
| IL_9QQB_134 | 1/B5/756:761, 1/B5/790:799 | No text annotation | ||
| IL_9QQB_135 | 1/B5/988:989, 1/B5/1123:1125 | Single bulged A | geometric IL_9C75_002 IL_31462.7 | |
| IL_9QQB_136 | 1/B5/997:999, 1/B5/1104:1108 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.3 | |
| IL_9QQB_137 | 1/B5/1001:1002, 1/B5/1100:1102 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_9QQB_138 | 1/B5/1007:1009, 1/B5/1093:1095 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 IL_87907.2 | |
| IL_9QQB_139 | 1/B5/1011:1012, 1/B5/1089:1091 | Single bulged U | geometric IL_8P9A_427 IL_89505.4 | |
| IL_9QQB_140 | 1/B5/1064:1066, 1/B5/1077:1079 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_9QQB_141 | 1/B5/1131:1133, 1/B5/1207:1208 | No text annotation | ||
| IL_9QQB_142 | 1/B5/1301:1304, 1/B5/1323:1326 | No text annotation | ||
| IL_9QQB_143 | 1/B5/1301:1305, 1/B5/1320:1326 | No text annotation | ||
| IL_9QQB_144 | 1/B5/1304:1305, 1/B5/1320:1323 | Single bulged A | geometric IL_4V9F_090 IL_42771.1 | |
| IL_9QQB_145 | 1/B5/1380:1384, 1/B5/1410:1415 | No text annotation | geometric IL_1M5K_001 IL_80926.1 | |
| IL_9QQB_146 | 1/B5/1386:1389, 1/B5/1405:1408 | Double sheared | geometric IL_9BZC_001 IL_09705.15 | |
| IL_9QQB_147 | 1/B5/1390:1392, 1/B5/1403:1404 | Single bulged C | geometric IL_6XKO_001 IL_61258.15 | |
| IL_9QQB_148 | 1/B5/1422:1423, 1/B5/1451:1453 | Single bulged A | geometric IL_8P9A_252 IL_31462.7 | |
| IL_9QQB_149 | 1/B5/1429:1431, 1/B5/1444:1445 | Single stack bend | geometric IL_8P9A_238 IL_90729.1 | |
| IL_9QQB_150 | 1/B5/1434:1435, 1/B5/1439:1441 | No text annotation | ||
| IL_9QQB_151 | 1/B5/1475:1477, 1/B5/1610:1612 | Isolated non-canonical cWW pair | geometric IL_8P9A_255 IL_87907.2 | |
| IL_9QQB_152 | 1/B5/1477:1481, 1/B5/1603:1610 | No text annotation | geometric IL_8P9A_256 IL_54041.2 | |
| IL_9QQB_153 | 1/B5/1500:1501, 1/B5/1567:1569 | Single bulged A | geometric IL_8CRE_031 IL_31462.7 | |
| IL_9QQB_154 | 1/B5/1505:1506, 1/B5/1531:1533 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_9QQB_155 | 1/B5/1506:1510, 1/B5/1527:1531 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_9QQB_156 | 1/B5/1541:1544, 1/B5/1560:1562 | No text annotation | geometric IL_8CRE_034 IL_51387.3 | |
| IL_9QQB_157 | 1/B5/1545:1547, 1/B5/1558:1559 | Single bulged U | geometric IL_8P9A_260 IL_89505.4 | |
| IL_9QQB_158 | 1/B5/1579:1581, 1/B5/1591:1595 | No text annotation | geometric IL_8CRE_036 IL_06549.2 | |
| IL_9QQB_159 | 1/B5/1626:1628, 1/B5/1637:1639 | Isolated non-canonical cWW pair | geometric IL_8CRE_037 IL_28037.2 | |
| IL_9QQB_160 | 1/B5/1641:1643, 1/B5/1787:1790 | No text annotation | ||
| IL_9QQB_161 | 1/B5/1649:1660, 1/B5/1780:1781 | No text annotation | ||
| IL_9QQB_162 | 1/B5/1662:1664, 1/B5/1777:1778 | No text annotation | geometric IL_8CRE_040 IL_00225.14 | |
| IL_9QQB_163 | 1/B5/1671:1677, 1/B5/1729:1736 | No text annotation | ||
| IL_9QQB_164 | 1/B5/1678:1683, 1/B5/1725:1728 | C-loop with bulged stacked A's | geometric IL_8CRE_043 IL_26222.2 | |
| IL_9QQB_165 | 1/B5/1685:1688, 1/B5/1720:1723 | Tandem non-canonical cWW pairs | geometric IL_8CRE_044 IL_77658.1 | |
| IL_9QQB_166 | 1/B5/1688:1690, 1/B5/1718:1720 | Isolated non-canonical cWW pair | geometric IL_8P9A_354 IL_87907.2 | |
| IL_9QQB_167 | 1/B5/1692:1695, 1/B5/1715:1716 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_68140.4 | |
| IL_9QQB_168 | 1/B5/1699:1702, 1/B5/1708:1711 | Tandem non-canonical cWW pairs | geometric IL_1D4R_003 IL_85033.2 | |
| IL_9QQB_169 | 1/B5/1753:1755, 1/B5/1762:1763 | No text annotation | geometric IL_8CRE_048 IL_00225.14 | |
| IL_9QQB_170 | 1/B5/1797:1799, 1/B5/1813:1815 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_87907.2 | |
| IL_9QQB_172 | 1/B5/1844:1848, 1/B5/2006:2010 | UAA/GAN | geometric IL_8P9A_276 IL_38507.2 | |
| IL_9QQB_173 | 1/B5/1850:1859, 1/B5/2002:2004 | No text annotation | ||
| IL_9QQB_174 | 1/B5/1859:1861, 1/B5/2001:2002 | No text annotation | ||
| IL_9QQB_175 | 1/B5/1865:1872, 1/B5/1992:1997 | No text annotation | geometric IL_8CRE_054 IL_77278.1 | |
| IL_9QQB_176 | 1/B5/1872:1883, 1/B5/1977:1992 | No text annotation | geometric IL_8P9A_280 IL_83149.1 | |
| IL_9QQB_177 | 1/B5/1885:1887, 1/B5/1974:1975 | Single bulged U | geometric IL_8P9A_281 IL_89505.4 | |
| IL_9QQB_178 | 1/B5/1896:1904, 1/B5/1961:1965 | Kink-turn | geometric IL_4V9F_042 IL_99692.2 | |
| IL_9QQB_179 | 1/B5/1912:1916, 1/B5/1928:1932 | No text annotation | geometric IL_8P9A_283 IL_16218.2 | |
| IL_9QQB_180 | 1/B5/1940:1944, 1/B5/1953:1955 | No text annotation | geometric IL_8P9A_284 IL_51387.3 | |
| IL_9QQB_181 | 1/B5/2022:2024, 1/B5/2115:2116 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_9QQB_182 | 1/B5/2133:2135, 1/B5/2185:2188 | No text annotation | geometric IL_8P9A_285 IL_42997.3 | |
| IL_9QQB_183 | 1/B5/2142:2144, 1/B5/2177:2178 | Single bulged A | geometric IL_3OXE_001 IL_31462.7 | |
| IL_9QQB_184 | 1/B5/2145:2152, 1/B5/2172:2176 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
| IL_9QQB_185 | 1/B5/2155:2157, 1/B5/2168:2169 | Single bulged A | geometric IL_7DLZ_001 IL_31462.7 | |
| IL_9QQB_186 | 1/B5/2201:2207, 1/B5/3590:3595 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 IL_26307.2 | |
| IL_9QQB_187 | 1/B5/2249:2252, 1/B5/2626:2627 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_9QQB_188 | 1/B5/2258:2262, 1/B5/2270:2272 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_9QQB_189 | 1/B5/2289:2293, 1/B5/2352:2357 | UAA/GAN | geometric IL_8CRE_067 IL_38507.2 | |
| IL_9QQB_190 | 1/B5/2320:2322, 1/B5/2342:2343 | Minor groove platform | geometric IL_8CRE_394 IL_51454.3 | |
| IL_9QQB_191 | 1/B5/2385:2390, 1/B5/2615:2617 | No text annotation | ||
| IL_9QQB_192 | 1/B5/2392:2393, 1/B5/2611:2613 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_9QQB_193 | 1/B5/2432:2436, 1/B5/2595:2599 | Triple sheared | geometric IL_9DFE_075 IL_50730.2 | |
| IL_9QQB_194 | 1/B5/2441:2445, 1/B5/2580:2590 | No text annotation | ||
| IL_9QQB_195 | 1/B5/2456:2457, 1/B5/2567:2569 | Single bulged A | geometric IL_3B31_001 IL_31462.7 | |
| IL_9QQB_196 | 1/B5/2457:2458, 1/B5/2565:2567 | Single stack bend | geometric IL_8CRE_075 IL_90729.1 | |
| IL_9QQB_197 | 1/B5/2489:2491, 1/B5/2528:2531 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_9QQB_198 | 1/B5/2494:2496, 1/B5/2524:2525 | Single bulged G | geometric IL_6TFF_002 IL_00225.14 | |
| IL_9QQB_199 | 1/B5/2499:2505, 1/B5/2515:2521 | No text annotation | geometric IL_8P9A_301 IL_69543.3 | |
| IL_9QQB_200 | 1/B5/2675:2681, 1/B5/3582:3585 | No text annotation | geometric IL_8P9A_302 IL_22829.2 | |
| IL_9QQB_201 | 1/B5/2687:2689, 1/B5/3574:3576 | No text annotation | geometric IL_8CRE_080 IL_67095.2 | |
| IL_9QQB_202 | 1/B5/2690:2693, 1/B5/3572:3573 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_50694.7 | |
| IL_9QQB_203 | 1/B5/2690:2698, 1/B5/3569:3573 | No text annotation | geometric IL_8CRE_082 IL_22854.4 | |
| IL_9QQB_204 | 1/B5/2693:2698, 1/B5/3569:3572 | No text annotation | geometric IL_8CRE_083 IL_76758.2 | |
| IL_9QQB_205 | 1/B5/2710:2715, 1/B5/2720:2726 | No text annotation | geometric IL_8CRE_084 IL_47346.2 | |
| IL_9QQB_206 | 1/B5/2732:2734, 1/B5/3342:3344 | Isolated non-canonical cWW pair | geometric IL_8P9A_308 IL_87907.2 | |
| IL_9QQB_207 | 1/B5/2739:2740, 1/B5/3334:3337 | No text annotation | geometric IL_8P9A_309 IL_73355.1 | |
| IL_9QQB_208 | 1/B5/3364:3365, 1/B5/3559:3561 | Single bulged A | geometric IL_4V9F_064 IL_31462.7 | |
| IL_9QQB_209 | 1/B5/3392:3397, 1/B5/3409:3416 | No text annotation | geometric IL_8P9A_311 IL_20047.1 | |
| IL_9QQB_210 | 1/B5/3432:3435, 1/B5/3481:3482 | Minor groove platform, major groove intercalation | geometric IL_8CRE_089 IL_95583.2 | |
| IL_9QQB_211 | 1/B5/3436:3437, 1/B5/3477:3480 | No text annotation | geometric IL_8CRE_090 IL_82107.5 | |
| IL_9QQB_212 | 1/B5/3440:3442, 1/B5/3473:3474 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_9QQB_213 | 1/B5/3442:3446, 1/B5/3471:3473 | No text annotation | ||
| IL_9QQB_214 | 1/B5/3447:3453, 1/B5/3464:3470 | No text annotation | geometric IL_8P9A_316 IL_88116.2 | |
| IL_9QQB_215 | 1/B5/3512:3513, 1/B5/3543:3546 | No text annotation | geometric IL_8CRE_094 IL_22551.4 | |
| IL_9QQB_216 | 1/B5/3513:3524, 1/B5/3540:3543 | No text annotation | geometric IL_8CRE_095 IL_42218.2 | |
| IL_9QQB_217 | 1/B5/3627:3630, 1/B5/4309:4311 | No text annotation | geometric IL_8CRE_096 IL_55516.2 | |
| IL_9QQB_218 | 1/B5/3632:3634, 1/B5/4304:4307 | No text annotation | geometric IL_8CRE_097 IL_83389.2 | |
| IL_9QQB_219 | 1/B5/3645:3647, 1/B5/4134:4135 | No text annotation | geometric IL_8CRE_098 IL_89505.4 | |
| IL_9QQB_220 | 1/B5/3648:3649, 1/B5/4130:4133 | Minor groove platform | geometric IL_8P9A_322 IL_51454.3 | |
| IL_9QQB_221 | 1/B5/3659:3661, 1/B5/3927:3930 | No text annotation | geometric IL_8CRE_100 IL_85599.2 | |
| IL_9QQB_222 | 1/B5/3677:3681, 1/B5/3791:3796 | No text annotation | ||
| IL_9QQB_223 | 1/B5/3687:3698, 1/B5/3783:3785 | No text annotation | ||
| IL_9QQB_224 | 1/B5/3702:3705, 1/B5/3766:3779 | No text annotation | geometric IL_3U4M_003 IL_75283.2 | |
| IL_9QQB_225 | 1/B5/3810:3816, 1/B5/3907:3910 | No text annotation | geometric IL_8CRE_106 IL_00555.1 | |
| IL_9QQB_226 | 1/B5/3823:3825, 1/B5/3840:3841 | No text annotation | ||
| IL_9QQB_227 | 1/B5/3861:3863, 1/B5/3895:3897 | Isolated cWH basepair | geometric IL_4KTG_001 IL_10167.6 | |
| IL_9QQB_228 | 1/B5/3866:3867, 1/B5/3890:3892 | Single bulged C | geometric IL_7PMM_001 IL_61258.15 | |
| IL_9QQB_229 | 1/B5/3937:3938, 1/B5/3948:3950 | Single bulged A | geometric IL_8P9A_325 IL_31462.7 | |
| IL_9QQB_230 | 1/B5/4037:4039, 1/B5/4063:4064 | Single bulged A | geometric IL_7MKY_001 IL_31462.7 | |
| IL_9QQB_231 | 1/B5/4041:4044, 1/B5/4058:4061 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_85033.2 | |
| IL_9QQB_232 | 1/B5/4093:4096, 1/B5/4110:4111 | Single stack bend | geometric IL_8P9A_328 IL_90729.1 | |
| IL_9QQB_233 | 1/B5/4146:4149, 1/B5/4186:4190 | No text annotation | geometric IL_8CRE_111 IL_68909.1 | |
| IL_9QQB_234 | 1/B5/4149:4151, 1/B5/4185:4186 | No text annotation | geometric IL_8P9A_331 IL_07039.3 | |
| IL_9QQB_235 | 1/B5/4151:4153, 1/B5/4181:4185 | No text annotation | geometric IL_8CRE_113 IL_51387.3 | |
| IL_9QQB_236 | 1/B5/4158:4162, 1/B5/4172:4176 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_17948.2 | |
| IL_9QQB_237 | 1/B5/4199:4200, 1/B5/4272:4274 | No text annotation | geometric IL_8P9A_334 IL_07039.3 | |
| IL_9QQB_238 | 1/B5/4202:4204, 1/B5/4266:4270 | Isolated non-canonical cWW with bulges | geometric IL_8P9A_335 IL_07785.1 | |
| IL_9QQB_239 | 1/B5/4204:4205, 1/B5/4263:4266 | No text annotation | geometric IL_8P9A_336 IL_42626.2 | |
| IL_9QQB_240 | 1/B5/4212:4214, 1/B5/4235:4237 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_87907.2 | |
| IL_9QQB_241 | 1/B5/4212:4216, 1/B5/4231:4237 | No text annotation | ||
| IL_9QQB_242 | 1/B5/4214:4216, 1/B5/4231:4235 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_9QQB_243 | 1/B5/4283:4284, 1/B5/4293:4295 | Single bulged A | geometric IL_8P9A_399 IL_31462.7 | |
| IL_9QQB_244 | 1/B5/4326:4328, 1/B5/4467:4469 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10167.6 | |
| IL_9QQB_245 | 1/B5/4328:4331, 1/B5/4463:4467 | Double sheared | geometric IL_8P9A_342 IL_09705.15 | |
| IL_9QQB_246 | 1/B5/4336:4338, 1/B5/4364:4366 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_87907.2 | |
| IL_9QQB_247 | 1/B5/4342:4349, 1/B5/4354:4360 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8CRE_125 IL_04346.10 | |
| IL_9QQB_248 | 1/B5/4370:4375, 1/B5/4415:4419 | No text annotation | ||
| IL_9QQB_249 | 1/B5/4378:4383, 1/B5/4408:4412 | No text annotation | geometric IL_8P9A_346 IL_21001.1 | |
| IL_9QQB_250 | 1/B5/4384:4386, 1/B5/4405:4407 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_9QQB_251 | 1/B5/4387:4388, 1/B5/4401:4404 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_9QQB_252 | 1/B5/4426:4431, 1/B5/4451:4456 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_9QQB_253 | 1/B5/4486:4489, 1/B5/4697:4698 | No text annotation | ||
| IL_9QQB_254 | 1/B5/4490:4493, 1/B5/4693:4696 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_85033.2 | |
| IL_9QQB_255 | 1/B5/4496:4498, 1/B5/4687:4690 | No text annotation | ||
| IL_9QQB_256 | 1/B5/4503:4513, 1/B5/4607:4616 | No text annotation | ||
| IL_9QQB_257 | 1/B5/4516:4519, 1/B5/4602:4604 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_51387.3 | |
| IL_9QQB_258 | 1/B5/4624:4627, 1/B5/4670:4673 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_77658.1 | |
| IL_9QQB_259 | 1/B5/4630:4635, 1/B5/4663:4667 | No text annotation | ||
| IL_9QQB_260 | 1/B5/4638:4640, 1/B5/4659:4660 | No text annotation | geometric IL_8CRE_002 IL_61258.15 | |
| IL_9QQB_261 | 1/B5/4711:4714, 1/B5/4722:4725 | Tandem non-canonical cWW pairs | geometric IL_8CRE_135 IL_77658.1 | |
| IL_9QQB_262 | 1/B5/4731:4733, 1/B5/4796:4798 | Isolated non-canonical cWW pair | geometric IL_4RBZ_002 IL_87907.2 | |
| IL_9QQB_263 | 1/B5/4735:4736, 1/B5/4792:4794 | No text annotation | ||
| IL_9QQB_264 | 1/B5/4739:4741, 1/B5/4784:4789 | No text annotation | geometric IL_8P9A_359 IL_43622.1 | |
| IL_9QQB_265 | 1/B5/4742:4748, 1/B5/4778:4783 | No text annotation | ||
| IL_9QQB_266 | 1/B5/4751:4753, 1/B5/4774:4775 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_9QQB_267 | 1/B5/4753:4756, 1/B5/4771:4774 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_9QQB_268 | 1/B7/15:16, 1/B7/62:64 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_9QQB_269 | 1/B7/21:27, 1/B7/52:57 | No text annotation | geometric IL_8OI5_135 IL_18487.1 | |
| IL_9QQB_270 | 1/B7/28:29, 1/B7/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_4WF9_126 IL_68140.4 | |
| IL_9QQB_271 | 1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.11 | |
| IL_9QQB_272 | 1/B7/71:78, 1/B7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_9QQB_273 | 1/B7/79:81, 1/B7/95:97 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_07785.1 | |
| IL_9QQB_274 | 1/B7/82:85, 1/B7/92:94 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_87907.2 | |
| IL_9QQB_275 | 1/B8/64:66, 1/B8/92:95 | Isolated non-canonical cWW with bulges | geometric IL_7ELQ_002 IL_07785.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9QQB_171 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9QQB_001 | 1/A2/40:41, 1/A2/482:488, 1/A2/513:515 | No text annotation | geometric J3_8P9A_068 J3_67856.4 | |
| J3_9QQB_002 | 1/A2/40:47, 1/A2/480:488, 1/A2/513:515 | No text annotation | geometric J3_8CRE_072 J3_46317.4 | |
| J3_9QQB_003 | 1/A2/223:239, 1/A2/280:289, 1/A2/296:299 | No text annotation | ||
| J3_9QQB_004 | 1/A2/683:686, 1/A2/918:923, 1/A2/1023:1024 | No text annotation | ||
| J3_9QQB_005 | 1/A2/683:686, 1/A2/918:924, 1/A2/1020:1024 | No text annotation | ||
| J3_9QQB_006 | 1/A2/817:820, 1/A2/830:832, 1/A2/844:849 | No text annotation | geometric J3_8P9A_073 J3_97642.1 | |
| J3_9QQB_007 | 1/A2/939:942, 1/A2/986:994, 1/A2/1001:1005 | No text annotation | geometric J3_8P9A_074 J3_76375.1 | |
| J3_9QQB_008 | 1/A2/1095:1097, 1/A2/1137:1141, 1/A2/1148:1152 | No text annotation | ||
| J3_9QQB_009 | 1/A2/1219:1222, 1/A2/1646:1652, 1/A2/1674:1681 | No text annotation | geometric J3_8P9A_076 J3_25303.4 | |
| J3_9QQB_010 | 1/A2/1226:1229, 1/A2/1531:1533, 1/A2/1639:1642 | No text annotation | geometric J3_8CRE_079 J3_52655.4 | |
| J3_9QQB_011 | 1/A2/1238:1245, 1/A2/1256:1267, 1/A2/1517:1521 | No text annotation | ||
| J3_9QQB_012 | 1/A2/1273:1278, 1/A2/1321:1325, 1/A2/1505:1511 | No text annotation | geometric J3_8P9A_079 J3_87797.1 | |
| J3_9QQB_013 | 1/A2/1341:1346, 1/A2/1385:1390, 1/A2/1482:1487 | No text annotation | ||
| J3_9QQB_014 | 1/A2/1351:1352, 1/A2/1361:1364, 1/A2/1376:1380 | No text annotation | geometric J3_8P9A_081 J3_76043.3 | |
| J3_9QQB_015 | 1/A2/1392:1396, 1/A2/1451:1457, 1/A2/1471:1480 | No text annotation | ||
| J3_9QQB_016 | 1/A2/1533:1537, 1/A2/1598:1605, 1/A2/1636:1639 | No text annotation | geometric J3_8CRE_086 J3_37047.6 | |
| J3_9QQB_017 | 1/B5/112:116, 1/B5/155:160, 1/B5/275:278 | No text annotation | ||
| J3_9QQB_018 | 1/B5/351:367, 1/B5/374:379, 1/B8/21:24 | No text annotation | geometric J3_8P9A_045 J3_30040.2 | |
| J3_9QQB_019 | 1/B5/380:387, 1/B5/414:415, 1/B8/19:20 | No text annotation | geometric J3_8P9A_046 J3_60031.2 | |
| J3_9QQB_020 | 1/B5/380:390, 1/B5/401:415, 1/B8/19:20 | No text annotation | geometric J3_8CRE_006 J3_92134.2 | |
| J3_9QQB_021 | 1/B5/451:455, 1/B5/695:699, 1/B5/1236:1240 | No text annotation | ||
| J3_9QQB_022 | 1/B5/1486:1492, 1/B5/1577:1579, 1/B5/1595:1598 | No text annotation | geometric J3_8P9A_049 J3_64189.2 | |
| J3_9QQB_023 | 1/B5/1501:1503, 1/B5/1535:1539, 1/B5/1564:1567 | No text annotation | geometric J3_8CRE_010 J3_44724.7 | |
| J3_9QQB_024 | 1/B5/1665:1666, 1/B5/1741:1745, 1/B5/1771:1776 | No text annotation | ||
| J3_9QQB_025 | 1/B5/1908:1910, 1/B5/1934:1940, 1/B5/1955:1957 | No text annotation | geometric J3_4V9F_004 J3_28621.5 | |
| J3_9QQB_026 | 1/B5/2236:2242, 1/B5/2648:2650, 1/B5/2662:2665 | No text annotation | geometric J3_8CRE_013 J3_19545.2 | |
| J3_9QQB_027 | 1/B5/2245:2248, 1/B5/2628:2634, 1/B5/2643:2645 | No text annotation | geometric J3_8CRE_014 J3_19545.2 | |
| J3_9QQB_028 | 1/B5/2283:2288, 1/B5/2358:2362, 1/B5/2379:2380 | No text annotation | geometric J3_8P9A_055 J3_31965.2 | |
| J3_9QQB_029 | 1/B5/2294:2299, 1/B5/2308:2319, 1/B5/2344:2351 | No text annotation | ||
| J3_9QQB_030 | 1/B5/2394:2398, 1/B5/2415:2418, 1/B5/2600:2610 | No text annotation | ||
| J3_9QQB_031 | 1/B5/2418:2419, 1/B5/2428:2432, 1/B5/2599:2600 | No text annotation | geometric J3_8P9A_087 J3_75962.2 | |
| J3_9QQB_032 | 1/B5/3669:3671, 1/B5/3802:3806, 1/B5/3914:3919 | Kink-turn 3-way junction | geometric J3_5J7L_044 J3_89368.5 | |
| J3_9QQB_033 | 1/B5/3819:3822, 1/B5/3842:3857, 1/B5/3901:3904 | No text annotation | ||
| J3_9QQB_034 | 1/B5/3974:3976, 1/B5/4077:4088, 1/B5/4116:4121 | No text annotation | geometric J3_8P9A_061 J3_20992.1 | |
| J3_9QQB_035 | 1/B5/3987:3991, 1/B5/4009:4015, 1/B5/4024:4029 | No text annotation | ||
| J3_9QQB_036 | 1/B5/4209:4212, 1/B5/4237:4239, 1/B5/4253:4259 | No text annotation | geometric J3_8P9A_063 J3_62630.1 | |
| J3_9QQB_037 | 1/B5/4498:4501, 1/B5/4618:4622, 1/B5/4675:4687 | No text annotation | ||
| J3_9QQB_038 | 1/B5/4709:4711, 1/B5/4725:4730, 1/B5/4799:4802 | No text annotation | ||
| J3_9QQB_039 | 1/B7/9:14, 1/B7/65:66, 1/B7/109:110 | No text annotation | geometric J3_8OI5_025 J3_12003.2 | |
| J3_9QQB_040 | 1/B8/44:45, 1/B8/58:64, 1/B8/95:99 | No text annotation | ||
| J4_9QQB_001 | 1/A2/98:106, 1/A2/356:358, 1/A2/406:410, 1/A2/432:433 | No text annotation | ||
| J4_9QQB_002 | 1/A2/672:674, 1/A2/1033:1038, 1/A2/1079:1090, 1/A2/1161:1162 | No text annotation | ||
| J4_9QQB_003 | 1/AT/7:10, 1/AT/25:27, 1/AT/43:49, 1/AT/65:66 | No text annotation | ||
| J4_9QQB_004 | 1/B5/111:112, 1/B5/278:283, 1/B5/304:310, 1/B5/327:330 | No text annotation | ||
| J4_9QQB_005 | 1/B5/196:199, 1/B5/215:222, 1/B5/226:228, 1/B5/240:244 | No text annotation | ||
| J4_9QQB_006 | 1/B5/706:707, 1/B5/855:861, 1/B5/871:878, 1/B5/1222:1228 | No text annotation | ||
| J4_9QQB_007 | 1/B5/883:885, 1/B5/985:987, 1/B5/1126:1127, 1/B5/1212:1217 | No text annotation | ||
| J4_9QQB_008 | 1/B5/2208:2214, 1/B5/2232:2234, 1/B5/2667:2672, 1/B5/3588:3589 | No text annotation | ||
| J4_9QQB_009 | 1/B5/2249:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2627 | No text annotation | ||
| J4_9QQB_010 | 1/B5/2252:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2626 | No text annotation | ||
| J4_9QQB_011 | 1/B5/2294:2299, 1/B5/2308:2312, 1/B5/2314:2319, 1/B5/2344:2351 | No text annotation | ||
| J4_9QQB_012 | 1/B5/2461:2462, 1/B5/2480:2485, 1/B5/2535:2541, 1/B5/2561:2562 | No text annotation | ||
| J4_9QQB_013 | 1/B5/3366:3370, 1/B5/3382:3386, 1/B5/3422:3426, 1/B5/3553:3558 | No text annotation | ||
| J4_9QQB_014 | 1/B5/3428:3430, 1/B5/3484:3485, 1/B5/3503:3512, 1/B5/3546:3551 | No text annotation | ||
| J4_9QQB_015 | 1/B5/3977:3981, 1/B5/4035:4037, 1/B5/4064:4065, 1/B5/4074:4076 | No text annotation | ||
| J4_9QQB_016 | 1/B5/3977:3981, 1/B5/4035:4039, 1/B5/4063:4065, 1/B5/4074:4076 | No text annotation | ||
| J4_9QQB_017 | 1/B5/4333:4336, 1/B5/4366:4367, 1/B5/4422:4424, 1/B5/4458:4461 | No text annotation | ||
| J5_9QQB_001 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:564, 1/A2/593:596, 1/A2/642:645 | No text annotation | ||
| J5_9QQB_002 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:566, 1/A2/586:596, 1/A2/642:645 | No text annotation | ||
| J5_9QQB_003 | 1/A2/53:56, 1/A2/89:96, 1/A2/435:437, 1/A2/458:460, 1/A2/471:475 | No text annotation | ||
| J5_9QQB_004 | 1/A2/123:129, 1/A2/183:185, 1/A2/214:215, 1/A2/311:313, 1/A2/338:342 | No text annotation | ||
| J5_9QQB_005 | 1/B5/20:21, 1/B8/35:42, 1/B8/101:106, 1/B8/113:114, 1/B8/136:137 | No text annotation | ||
| J5_9QQB_006 | 1/B5/1279:1284, 1/B5/1471:1474, 1/B5/1613:1616, 1/B5/2131:2133, 1/B5/2188:2194 | No text annotation | ||
| J5_9QQB_007 | 1/B5/2698:2706, 1/B5/2730:2731, 1/B5/3345:3346, 1/B5/3350:3358, 1/B5/3567:3569 | No text annotation | ||
| J5_9QQB_008 | 1/B5/3635:3642, 1/B5/4138:4146, 1/B5/4190:4199, 1/B5/4274:4280, 1/B5/4298:4303 | No text annotation | ||
| J5_9QQB_009 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3974, 1/B5/4121:4127 | No text annotation | ||
| J6_9QQB_001 | 1/B5/21:26, 1/B5/57:67, 1/B5/74:78, 1/B5/105:109, 1/B5/332:339, 1/B8/33:35 | No text annotation | ||
| J6_9QQB_002 | 1/B5/1296:1299, 1/B5/1328:1332, 1/B5/1339:1343, 1/B5/1373:1376, 1/B5/1419:1421, 1/B5/1454:1459 | No text annotation | ||
| J6_9QQB_003 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3976, 1/B5/4077:4088, 1/B5/4116:4127 | No text annotation | ||
| J7_9QQB_001 | 1/B5/1621:1626, 1/B5/1639:1640, 1/B5/1791:1794, 1/B5/1818:1823, 1/B5/1834:1838, 1/B5/2016:2017, 1/B5/2121:2126 | No text annotation |
Problematic loops
No problematic loops
Coloring options: