HL_9QQB_026

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_026 not in the Motif Atlas

Geometric match to HL_8P9A_217

Geometric discrepancy: 0.0888

The information below is about HL_8P9A_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9QQB|1|A2|A|1354
9QQB|1|A2|G|1355
9QQB|1|A2|C|1356
9QQB|1|A2|G|1357
9QQB|1|A2|A|1358
9QQB|1|A2|U|1359

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

Small ribosomal subunit protein uS2

Chain Ab

40S ribosomal protein S2