HL_9QQB_036

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCUAACACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_036 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.1073

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9QQB|1|AT|C|31
9QQB|1|AT|C|32
9QQB|1|AT|U|33
9QQB|1|AT|A|34
9QQB|1|AT|A|35
9QQB|1|AT|C|36
9QQB|1|AT|A|37
9QQB|1|AT|C|38
9QQB|1|AT|G|39

Current chains

Chain AT

P site Phe tRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ao

Small ribosomal subunit protein uS19

Chain Ap

Small ribosomal subunit protein uS9