HL_9QQB_037

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

G(5MU)(PSU)CGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_037 not in the Motif Atlas

Geometric match to HL_5AXM_003

Geometric discrepancy: 0.1179

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9QQB|1|AT|G|53
9QQB|1|AT|5MU|54
9QQB|1|AT|PSU|55
9QQB|1|AT|C|56
9QQB|1|AT|G|57
9QQB|1|AT|A|58
9QQB|1|AT|A|59
9QQB|1|AT|A|60
9QQB|1|AT|C|61

Current chains

Chain AT

P site Phe tRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

60S ribosomal protein L11

Chain Bo

Large ribosomal subunit protein eL42