HL_9QQB_052

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9QQB|1|B5|C|1269

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_052 not in the Motif Atlas

Geometric match to HL_8CRE_013

Geometric discrepancy: 0.1175

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9QQB|1|B5|U|1261
9QQB|1|B5|C|1262
9QQB|1|B5|U|1263
9QQB|1|B5|U|1264
9QQB|1|B5|G|1265
9QQB|1|B5|1MA|1266
9QQB|1|B5|A|1267
9QQB|1|B5|A|1268
9QQB|1|B5|C|1269
9QQB|1|B5|A2M|1270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32