HL_9QQB_062

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9QQB|1|B5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_062 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.1579

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9QQB|1|B5|C|1755
9QQB|1|B5|U|1756
9QQB|1|B5|G|1757
9QQB|1|B5|G|1758
9QQB|1|B5|C|1759
9QQB|1|B5|G|1760
9QQB|1|B5|U|1761
9QQB|1|B5|G|1762

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL18

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29