HL_9QQB_070

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9QQB|1|B5|G|2264, 9QQB|1|B5|U|2268

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_070 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.1646

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9QQB|1|B5|A|2263
9QQB|1|B5|G|2264
9QQB|1|B5|OMC|2265
9QQB|1|B5|A|2266
9QQB|1|B5|OMG|2267
9QQB|1|B5|U|2268
9QQB|1|B5|U|2269

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

Large ribosomal subunit protein uL22

Chain BR

Ribosomal protein L19

Chain Bl

60S ribosomal protein L39-like