HL_9QQB_085

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9QQB|1|B5|C|3405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_085 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.3042

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9QQB|1|B5|C|3400
9QQB|1|B5|G|3401
9QQB|1|B5|C|3402
9QQB|1|B5|G|3403
9QQB|1|B5|G|3404
9QQB|1|B5|C|3405
9QQB|1|B5|G|3406

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15