HL_9QQB_089

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9QQB|1|B5|A|3608, 9QQB|1|B5|A|3609, 9QQB|1|B5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_089 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.1231

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9QQB|1|B5|G|3605
9QQB|1|B5|G|3606
9QQB|1|B5|G|3607
9QQB|1|B5|A|3608
9QQB|1|B5|A|3609
9QQB|1|B5|C|3610
9QQB|1|B5|G|3611
9QQB|1|B5|G|3612
9QQB|1|B5|G|3613
9QQB|1|B5|C|3614

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Be

Ribosomal protein L32