HL_9QQB_092

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

9QQB|1|B5|A|3960, 9QQB|1|B5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_092 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.1132

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9QQB|1|B5|U|3956
9QQB|1|B5|C|3957
9QQB|1|B5|A|3958
9QQB|1|B5|A|3959
9QQB|1|B5|A|3960
9QQB|1|B5|C|3961
9QQB|1|B5|G|3962
9QQB|1|B5|G|3963
9QQB|1|B5|U|3964
9QQB|1|B5|A|3965
9QQB|1|B5|6MZ|3966
9QQB|1|B5|C|3967
9QQB|1|B5|G|3968

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29