HL_9QQB_098

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_098 not in the Motif Atlas

Geometric match to HL_8P9A_172

Geometric discrepancy: 0.1364

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9QQB|1|B5|C|4163
9QQB|1|B5|G|4164
9QQB|1|B5|U|4165
9QQB|1|B5|PSU|4166
9QQB|1|B5|C|4167
9QQB|1|B5|A|4168
9QQB|1|B5|PSU|4169
9QQB|1|B5|A|4170
9QQB|1|B5|G|4171

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein