HL_9QQP_075
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGUUCGAUUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9QQP_075 not in the Motif Atlas
- Homologous match to HL_5E81_248
- Geometric discrepancy: 0.5628
- The information below is about HL_5E81_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_60848.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9QQP|1|Bv|U|51
9QQP|1|Bv|G|52
9QQP|1|Bv|G|53
9QQP|1|Bv|U|54
9QQP|1|Bv|U|55
9QQP|1|Bv|C|56
9QQP|1|Bv|G|57
9QQP|1|Bv|A|58
9QQP|1|Bv|U|59
9QQP|1|Bv|U|60
9QQP|1|Bv|C|61
9QQP|1|Bv|C|62
9QQP|1|Bv|G|63
Current chains
- Chain Bv
- transfer RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D1
- Large ribosomal subunit protein uL16
- Chain E1
- Large ribosomal subunit protein uL5
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