HL_9QQP_115

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

9QQP|1|n2|C|55, 9QQP|1|n2|G|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQP_115 not in the Motif Atlas

Homologous match to HL_2ZZM_004

Geometric discrepancy: 0.2819

The information below is about HL_2ZZM_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9QQP|1|n2|G|52
9QQP|1|n2|A|53
9QQP|1|n2|U|54
9QQP|1|n2|C|55
9QQP|1|n2|G|56
9QQP|1|n2|A|57
9QQP|1|n2|A|58
9QQP|1|n2|A|59
9QQP|1|n2|C|60

Current chains

Chain n2

transfer RNA

Nearby chains