HL_9QQQ_003

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQQ_003 not in the Motif Atlas

Geometric match to HL_1MZP_001

Geometric discrepancy: 0.072

The information below is about HL_1MZP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9QQQ|1|A|C|186
9QQQ|1|A|G|187
9QQQ|1|A|C|188
9QQQ|1|A|A|189
9QQQ|1|A|A|190
9QQQ|1|A|G|191

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20